An in-silico evaluation of dietary components for structural inhibition of SARS-Cov-2 main protease

被引:27
作者
Pandey, Anand Kumar [1 ]
Verma, Shalja [1 ,2 ]
机构
[1] Bundelkhand Univ, Inst Engn & Technol, Dept Biotechnol Engn, Jhansi 284128, Uttar Pradesh, India
[2] Indian Inst Technol, Dept Biochem Engn & Biotechnol, New Delhi, India
关键词
Covid-19; SARS-CoV-2 main protease; natural antioxidants; molecular docking; pharmacophore modeling; AUTOMATED DOCKING; PROTEINS;
D O I
10.1080/07391102.2020.1809522
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The main protease (M-pro) of SARS-CoV-2 is responsible for the cleavage of viral replicase polyproteins 1a and 1ab into their mature form and is highly specific and exclusive in its activity. Many studies have targeted this enzyme by small molecule inhibitors to develop therapeutics against the highly infectious disease Covid-19. Our diet contains many natural antioxidants which along with providing support for proper growth and functioning of the body, pose additional health benefits. Present in-silico analysis depicted that natural antioxidants like sesamin, ellagic acid, capsaisin, and epicatechin along with galangin, exhibited significant binding at the catalytic site of the M(pro)enzyme. They interacted with excellent efficiency with the chief active site residue Cys145 and thus seem to possess the remarkable potential to act as drug candidates for the treatment of Covid-19. Such dietary compounds can be easily administered orally with least toxicity related concern and thus yell for urgent exhaustive research to develop into efficient therapies. Communicated by Ramaswamy H. Sarma
引用
收藏
页码:136 / 142
页数:7
相关论文
共 22 条
[1]   Exploring the Potentiality of Natural Products from Essential Oils as Inhibitors of Odorant-Binding Proteins: A Structure- and Ligand-Based Virtual Screening Approach To Find Novel Mosquito Repellents [J].
da Costa, Kaue Santana ;
Galucio, Joao Marcos ;
Souza da Costa, Clauber Henrique ;
Santana, Amanda Ruslana ;
Carvalho, Vitor dos Santos ;
do Nascimento, Lidiane Diniz ;
Lima e Lima, Anderson Henrique ;
Cruz, Jorddy Neves ;
Alves, Claudio Nahum ;
Lameira, Jeronimo .
ACS OMEGA, 2019, 4 (27) :22475-22486
[2]   Bioactive Natural Compounds and Antioxidant Activity of Essential Oils from Spice Plants: New Findings and Potential Applications [J].
Diniz do Nascimento, Lidiane ;
Barbosa de Moraes, Angelo Antonio ;
Santana da Costa, Kaue ;
Pereira Galucio, Joao Marcos ;
Taube, Paulo Sergio ;
Leal Costa, Cristiane Maria ;
Neves Cruz, Jorddy ;
de Aguiar Andrade, Eloisa Helena ;
Guerreiro de Faria, Lenio Jose .
BIOMOLECULES, 2020, 10 (07) :1-37
[3]   Computational protein-ligand docking and virtual drug screening with the AutoDock suite [J].
Forli, Stefano ;
Huey, Ruth ;
Pique, Michael E. ;
Sanner, Michel F. ;
Goodsell, David S. ;
Olson, Arthur J. .
NATURE PROTOCOLS, 2016, 11 (05) :905-919
[4]  
Jin Z, 2020, NATURE, V582, P289, DOI [10.1038/s41586-020-2223-y, DOI 10.1038/s41586-020-2223-y], Patent No. 2020086857
[5]   Structural basis for the inhibition of SARS-CoV-2 main protease by antineoplastic drug carmofur [J].
Jin, Zhenming ;
Zhao, Yao ;
Sun, Yuan ;
Zhang, Bing ;
Wang, Haofeng ;
Wu, Yan ;
Zhu, Yan ;
Zhu, Chen ;
Hu, Tianyu ;
Du, Xiaoyu ;
Duan, Yinkai ;
Yu, Jing ;
Yang, Xiaobao ;
Yang, Xiuna ;
Yang, Kailin ;
Liu, Xiang ;
Guddat, Luke W. ;
Xiao, Gengfu ;
Zhang, Leike ;
Yang, Haitao ;
Rao, Zihe .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2020, 27 (06) :529-+
[6]   Experimental validation of genetic selection for resistance against Streptococcus agalactiae via different routes of infection in the commercial Nile tilapia breeding programme [J].
Joshi, Rajesh ;
Skaaurd, Anders ;
Alvarez, Alejandro Tola .
JOURNAL OF ANIMAL BREEDING AND GENETICS, 2021, 138 (03) :338-348
[7]   Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings [J].
Lipinski, CA ;
Lombardo, F ;
Dominy, BW ;
Feeney, PJ .
ADVANCED DRUG DELIVERY REVIEWS, 1997, 23 (1-3) :3-25
[8]   SATISFYING HYDROGEN-BONDING POTENTIAL IN PROTEINS [J].
MCDONALD, IK ;
THORNTON, JM .
JOURNAL OF MOLECULAR BIOLOGY, 1994, 238 (05) :777-793
[9]   Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4 [J].
Morris, GM ;
Goodsell, DS ;
Huey, R ;
Olson, AJ .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1996, 10 (04) :293-304
[10]  
Morris GM, 1998, J COMPUT CHEM, V19, P1639, DOI 10.1002/(SICI)1096-987X(19981115)19:14<1639::AID-JCC10>3.0.CO