DNA Extraction from Museum Specimens of Parasitic Hymenoptera

被引:26
作者
Andersen, Jeremy C. [1 ]
Mills, Nicholas J. [1 ]
机构
[1] Univ Calif Berkeley, Dept Environm Sci Policy & Management, Berkeley, CA 94720 USA
来源
PLOS ONE | 2012年 / 7卷 / 10期
关键词
BUMBLE BEES BOMBUS; TRIOXYS-PALLIDUS; MULTIMODEL INFERENCE; BEHAVIORAL ECOLOGY; MODEL SELECTION; HIGH-ACCURACY; AMPLIFICATION; COLLECTIONS; HEMIPTERA; PRIMERS;
D O I
10.1371/journal.pone.0045549
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
At the same time that molecular researchers are improving techniques to extract DNA from museum specimens, this increased demand for access to museum specimens has created tension between the need to preserve specimens for maintaining collections and morphological research and the desire to conduct molecular analyses. To address these concerns, we examined the suitability of non-invasive DNA extraction techniques on three species of parasitic Hymenoptera (Braconidae), and test the effects of body size (parasitoid species), age (time since collection), and DNA concentration from each extract on the probability of amplifying meaningful fragments of two commonly used genetic loci. We found that age was a significant factor for determining the probability of success for sequencing both 28S and COI fragments. While the size of the braconid parasitoids significantly affected the total amount of extracted DNA, neither size nor DNA concentration were significant factors for the amplification of either gene region. We also tested several primer combinations of various lengths, but were unable to amplify fragments longer than similar to 150 base pairs. These short fragments of 28S and COI were however sufficient for species identification, and for the discovery of within species genetic variation.
引用
收藏
页数:10
相关论文
共 48 条
  • [1] Agresti A., 2009, Statistical Methods for the Social Sciences, V4th, P441
  • [2] Primers for identification of type and other archived specimens of Aphrodes leafhoppers (Hemiptera, Cicadellidae)
    Bluemel, Joanna K.
    King, R. Andrew
    Virant-Doberlet, Meta
    Symondson, William O. C.
    [J]. MOLECULAR ECOLOGY RESOURCES, 2011, 11 (05) : 770 - 774
  • [3] AIC model selection and multimodel inference in behavioral ecology: some background, observations, and comparisons
    Burnham, Kenneth P.
    Anderson, David R.
    Huyvaert, Kathryn P.
    [J]. BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY, 2011, 65 (01) : 23 - 35
  • [4] Burnham KP., 2002, MODEL SELECTION MULT, DOI DOI 10.1007/B97636
  • [5] Deyrup MA, 1975, B U WASHINGTON
  • [6] Dolphin K, 2001, BIOL J LINN SOC, V73, P279, DOI [10.1111/j.1095-8312.2001.tb01363.x, 10.1006/bijl.2001.0537]
  • [7] Drummond A, 2011, GENEIOUS V 5 5 4
  • [8] MUSCLE: multiple sequence alignment with high accuracy and high throughput
    Edgar, RC
    [J]. NUCLEIC ACIDS RESEARCH, 2004, 32 (05) : 1792 - 1797
  • [9] Folmer O., 1994, Molecular Marine Biology and Biotechnology, V3, P294
  • [10] PriFi: using a multiple alignment of related sequences to find primers for amplification of homologs
    Fredslund, J
    Schauser, L
    Madsen, LH
    Sandal, N
    Stougaard, J
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : W516 - W520