The Cancer Epidemiology Descriptive Cohort Database: A Tool to Support Population-Based Interdisciplinary Research

被引:0
作者
Kennedy, Amy E. [1 ]
Khoury, Muin J. [2 ]
Ioannidis, John P. A. [3 ,4 ,5 ,6 ]
Brotzman, Michelle [7 ]
Miller, Amy [7 ]
Lane, Crystal [8 ]
Lai, Gabriel Y. [1 ]
Rogers, Scott D. [1 ]
Harvey, Chinonye [1 ]
Elena, Joanne W. [1 ]
Seminara, Daniela [9 ]
机构
[1] NCI, Epidemiol & Genom Res Program, Div Canc Control & Populat Sci, NIH, Rockville, MD USA
[2] Ctr Dis Control & Prevent, Off Publ Hlth Genom, Atlanta, GA USA
[3] Stanford Univ, Dept Med, Stanford, CA 94305 USA
[4] Stanford Univ, Dept Hlth Res & Policy, Stanford, CA 94305 USA
[5] Stanford Univ, Dept Stat, Stanford, CA 94305 USA
[6] Stanford Univ, Meta Res Innovat Ctr Stanford METRICS, Stanford, CA 94305 USA
[7] Westat Corp, Rockville, MD USA
[8] US Hlth Resources & Serv Adm, Off Epidemiol & Res, Maternal & Child Hlth Bur, Rockville, MD 20857 USA
[9] NCI, Div Canc Control & Populat Sci, NIH, Rockville, MD USA
关键词
GENOME-WIDE ASSOCIATION; PRECISION MEDICINE; RISK; TRIALS; TRANSFORMATION; BREAST; LOCUS; GENE;
D O I
10.1158/1055-9965.EPI-16-0412
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Background: We report on the establishment of a web-based Cancer Epidemiology Descriptive Cohort Database (CEDCD). The CEDCD's goals are to enhance awareness of resources, facilitate interdisciplinary research collaborations, and support existing cohorts for the study of cancer-related outcomes. Methods: Comprehensive descriptive data were collected from large cohorts established to study cancer as primary outcome using a newly developed questionnaire. These included an inventory of baseline and follow-up data, biospecimens, genomics, policies, and protocols. Additional descriptive data extracted from publicly available sources were also collected. This information was entered in a searchable and publicly accessible database. We summarized the descriptive data across cohorts and reported the characteristics of this resource. Results: As of December 2015, the CEDCD includes data from 46 cohorts representing more than 6.5 million individuals (29% ethnic/racial minorities). Overall, 78% of the cohorts have collected blood at least once, 57% at multiple time points, and 46% collected tissue samples. Genotyping has been performed by 67% of the cohorts, while 46% have performed whole-genome or exome sequencing in subsets of enrolled individuals. Information on medical conditions other than cancer has been collected in more than 50% of the cohorts. More than 600,000 incident cancer cases and more than 40,000 prevalent cases are reported, with 24 cancer sites represented. Conclusions: The CEDCD assembles detailed descriptive information on a large number of cancer cohorts in a searchable database. Impact: Information from the CEDCD may assist the interdisciplinary research community by facilitating identification of well-established population resources and large-scale collaborative and integrative research. (C) 2016 AACR.
引用
收藏
页码:1392 / 1401
页数:10
相关论文
共 34 条
  • [1] Genome-wide association study identifies variants in the ABO locus associated with susceptibility to pancreatic cancer
    Amundadottir, Laufey
    Kraft, Peter
    Stolzenberg-Solomon, Rachael Z.
    Fuchs, Charles S.
    Petersen, Gloria M.
    Arslan, Alan A.
    Bueno-de-Mesquita, H. Bas
    Gross, Myron
    Helzlsouer, Kathy
    Jacobs, Eric J.
    LaCroix, Andrea
    Zheng, Wei
    Albanes, Demetrius
    Bamlet, William
    Berg, Christine D.
    Berrino, Franco
    Bingham, Sheila
    Buring, Julie E.
    Bracci, Paige M.
    Canzian, Federico
    Clavel-Chapelon, Francoise
    Clipp, Sandra
    Cotterchio, Michelle
    de Andrade, Mariza
    Duell, Eric J.
    Fox, John W., Jr.
    Gallinger, Steven
    Gaziano, J. Michael
    Giovannucci, Edward L.
    Goggins, Michael
    Gonzalez, Carlos A.
    Hallmans, Goran
    Hankinson, Susan E.
    Hassan, Manal
    Holly, Elizabeth A.
    Hunter, David J.
    Hutchinson, Amy
    Jackson, Rebecca
    Jacobs, Kevin B.
    Jenab, Mazda
    Kaaks, Rudolf
    Klein, Alison P.
    Kooperberg, Charles
    Kurtz, Robert C.
    Li, Donghui
    Lynch, Shannon M.
    Mandelson, Margaret
    McWilliams, Robert R.
    Mendelsohn, Julie B.
    Michaud, Dominique S.
    [J]. NATURE GENETICS, 2009, 41 (09) : 986 - U47
  • [2] Prediagnosis biomarkers of insulin-like growth factor-1, insulin, and interleukin-6 dysregulation and multiple myeloma risk in the Multiple Myeloma Cohort Consortium
    Birmann, Brenda M.
    Neuhouser, Marian L.
    Rosner, Bernard
    Albanes, Demetrius
    Buring, Julie E.
    Giles, Graham G.
    Lan, Qing
    Lee, I-Min
    Purdue, Mark P.
    Rothman, Nathaniel
    Severi, Gianluca
    Yuan, Jian-Min
    Anderson, Kenneth C.
    Pollak, Michael
    Rifai, Nader
    Hartge, Patricia
    Landgren, Ola
    Lessin, Lawrence
    Virtamo, Jarmo
    Wallace, Robert B.
    Manson, Joann E.
    Colditz, Graham A.
    [J]. BLOOD, 2012, 120 (25) : 4929 - 4937
  • [3] Translational Genomics is Not a Spectator Sport: A Call to Action
    Boerwinkle, Eric
    [J]. GENETIC EPIDEMIOLOGY, 2012, 36 (02) : 85 - 87
  • [4] Preregistration of Epidemiology Protocols A Commentary in Support
    Bracken, Michael B.
    [J]. EPIDEMIOLOGY, 2011, 22 (02) : 135 - 137
  • [5] A comprehensive analysis of the androgen receptor gene and risk of breast cancer:: results from the National Cancer Institute Breast and Prostate Cancer Cohort Consortium (BPC3)
    Cox, David G.
    Blanche, Helene
    Pearce, Celeste L.
    Calle, Eugenia E.
    Colditz, Graham A.
    Pike, Malcolm C.
    Albanes, Demetrius
    Allen, Naomi E.
    Amiano, Pilar
    Berglund, Goran
    Boeing, Heiner
    Buring, Julie
    Burtt, Noel
    Canzian, Federico
    Chanock, Stephen
    Clavel-Chapelon, Francoise
    Feigelson, Heather Spencer
    Freedman, Matthew
    Haiman, Christopher A.
    Hankinson, Susan E.
    Henderson, Brian E.
    Hoover, Robert
    Hunter, David J.
    Kaaks, Rudolf
    Kolonel, Laurence
    Kraft, Peter
    LeMarchand, Loic
    Lund, Eiliv
    Palli, Domenico
    Peeters, Petra H. M.
    Riboli, Elio
    Stram, Daniel O.
    Thun, Michael
    Tjonneland, Anne
    Trichopoulos, Dimitrios
    Yeager, Meredith
    [J]. BREAST CANCER RESEARCH, 2006, 8 (05)
  • [6] Making Prospective Registration of Observational Research a Reality
    Dal-Re, Rafael
    Ioannidis, John P.
    Bracken, Michael B.
    Buffler, Patricia A.
    Chan, An-Wen
    Franco, Eduardo L.
    La Vecchia, Carlo
    Weiderpass, Elisabete
    [J]. SCIENCE TRANSLATIONAL MEDICINE, 2014, 6 (224)
  • [7] Circulating 25-Hydroxyvitamin D and the Risk of Rarer Cancers: Design and Methods of the Cohort Consortium Vitamin D Pooling Project of Rarer Cancers
    Gallicchio, Lisa
    Helzlsouer, Kathy J.
    Chow, Wong-Ho
    Freedman, D. Michal
    Hankinson, Susan E.
    Hartge, Patricia
    Hartmuller, Virginia
    Harvey, Chinonye
    Hayes, Richard B.
    Horst, Ronald L.
    Koenig, Karen L.
    Kolonel, Laurence N.
    Laden, Francine
    McCullough, Marjorie L.
    Parisi, Dominick
    Purdue, Mark P.
    Shu, Xiao-Ou
    Snyder, Kirk
    Stolzenberg-Solomon, Rachael Z.
    Tworoger, Shelley S.
    Varanasi, Arti
    Virtamo, Jarmo
    Wilkens, Lynne R.
    Xiang, Yong-Bing
    Yu, Kai
    Zeleniuch-Jacquotte, Anne
    Zheng, Wei
    Abnet, Christian C.
    Albanes, Demetrius
    Bertrand, Kimberly
    Weinstein, Stephanie J.
    [J]. AMERICAN JOURNAL OF EPIDEMIOLOGY, 2010, 172 (01) : 10 - 20
  • [8] A candidate gene approach to searching for low-penetrance breast and prostate cancer genes
    Hunter, DJ
    Riboli, E
    Haiman, CA
    Albanes, D
    Altshuler, D
    Chanock, SJ
    Hayes, RB
    Henderson, BE
    Kaaks, R
    Stram, DO
    Thomas, G
    Thun, MJ
    [J]. NATURE REVIEWS CANCER, 2005, 5 (12) : 977 - 985
  • [9] Nested Randomized trials in large cohorts and biobanks - Studying the health effects of lifestyle factors
    Ioannidis, John P. A.
    Adami, Hans-Olov
    [J]. EPIDEMIOLOGY, 2008, 19 (01) : 75 - 82
  • [10] Khoury MJ, 2015, FUTURE EPIDEMIOLOGY