An extensive comparison of species-abundance distribution models

被引:64
|
作者
Baldridge, Elita [1 ,2 ]
Harris, David J. [3 ]
Xiao, Xiao [1 ,2 ,4 ,5 ]
White, Ethan P. [1 ,2 ,3 ,6 ]
机构
[1] Utah State Univ, Dept Biol, Logan, UT 84322 USA
[2] Utah State Univ, Ctr Ecol, Logan, UT 84322 USA
[3] Univ Florida, Dept Wildlife Ecol & Conservat, Gainesville, FL 32611 USA
[4] Univ Maine, Sch Biol & Ecol, Orono, ME USA
[5] Univ Maine, Senator George J Mitchell Ctr Sustainabil Solut, Orono, ME USA
[6] Univ Florida, Inst Informat, Gainesville, FL 32611 USA
来源
PEERJ | 2016年 / 4卷
基金
美国国家科学基金会;
关键词
Species-abundance distribution; Informatics; Commonness; Rarity; Citizen science; Animals; Plants; Community structure; MAXIMUM-ENTROPY; NEUTRAL THEORY; PATTERNS;
D O I
10.7717/peerj.2823
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
A number of different models have been proposed as descriptions of the species abundance distribution (SAD). Most evaluations of these models use only one or two models, focus on only a single ecosystem or taxonomic group, or fail to use appropriate statistical methods. We use likelihood and AIC to compare the fit of four of the most widely used models to data on over 16,000 communities from a diverse array of taxonomic groups and ecosystems. Across all datasets combined the log series, Poisson lognormal, and negative binomial all yield similar overall fits to the data. Therefore, when correcting for differences in the number of parameters the log series generally provides the best fit to data. Within individual datasets some other distributions performed nearly as well as the log-series even after correcting for the number of parameters. The Zipf distribution is generally a poor characterization of the SAD.
引用
收藏
页数:14
相关论文
共 50 条
  • [21] A general framework for species-abundance distributions: Linking traits and dispersal to explain commonness and rarity
    Koffel, Thomas
    Umemura, Kaito
    Litchman, Elena
    Klausmeier, Christopher A.
    ECOLOGY LETTERS, 2022, 25 (11) : 2359 - 2371
  • [22] On ecology of post-fire soil fungi: assessing impact of disturbance using species-abundance models as measure of community organization
    Persiani, A. M.
    PLANT BIOSYSTEMS, 2013, 147 (04): : 1104 - 1106
  • [23] Climatic and geographic correlates of global forest tree species-abundance distributions and community evenness
    Ulrich, Werner
    Kusumoto, Buntarou
    Shiono, Takayuki
    Kubota, Yasuhiro
    JOURNAL OF VEGETATION SCIENCE, 2016, 27 (02) : 295 - 305
  • [24] Using species abundance distribution models and diversity indices for biogeographical analyses
    Fattorini, Simone
    Rigal, Francois
    Cardoso, Pedro
    Borges, Paulo A. V.
    ACTA OECOLOGICA-INTERNATIONAL JOURNAL OF ECOLOGY, 2016, 70 : 21 - 28
  • [25] Measurement scale in maximum entropy models of species abundance
    Frank, S. A.
    JOURNAL OF EVOLUTIONARY BIOLOGY, 2011, 24 (03) : 485 - 496
  • [26] Neutral theory and the species abundance distribution: recent developments and prospects for unifying niche and neutral perspectives
    Matthews, Thomas J.
    Whittaker, Robert J.
    ECOLOGY AND EVOLUTION, 2014, 4 (11): : 2263 - 2277
  • [27] Species abundance distribution of benthic chironomids and other macroinvertebrates across different levels of pollution in streams
    Tang, Hongqu
    Song, Mi-Young
    Cho, Woon-Seok
    Park, Young-Seuk
    Chon, Tae-Soo
    ANNALES DE LIMNOLOGIE-INTERNATIONAL JOURNAL OF LIMNOLOGY, 2010, 46 (01) : 53 - 66
  • [28] Species abundance distributions as a proxy for the niche-neutrality continuum
    Wang, Xianzhi
    Ellwood, M. D. Farnon
    Ai, Dexiecuo
    Zhang, Renyi
    Wang, Gang
    JOURNAL OF PLANT ECOLOGY, 2018, 11 (03) : 445 - 452
  • [29] Unseen rare tree species in southeast Brazilian forests: a species abundance distribution approach
    Nunes Santos Terra, Marcela de Castro
    de Oliveira Silveira, Eduarda Martiniano
    Withey, Kieran Daniel
    de Mello, Jose Marcio
    Cordeiro, Natielle Gomes
    Guimaraes Pereira, Kelly Marianne
    Soares Scolforo, Jose Roberto
    COMMUNITY ECOLOGY, 2020, 21 (03) : 229 - 238
  • [30] Effects of predation and variation in species relative abundance on the parameters of neutral models
    Fuller M.M.
    Romanuk T.N.
    Kolasa J.
    Community Ecology, 2005, 6 (2) : 229 - 240