Minimal Experimental Bias on the Hydrogen Bond Greatly Improves Ab Initio Molecular Dynamics Simulations of Water

被引:11
作者
Calio, Paul B. [1 ,2 ]
Hocky, Glen M. [1 ,2 ,3 ]
Voth, Gregory A. [1 ,2 ]
机构
[1] Univ Chicago, Dept Chem, Chicago Ctr Theoret Chem, James Franck Inst, Chicago, IL 60637 USA
[2] Univ Chicago, Inst Biophys Dynam, Chicago, IL 60637 USA
[3] NYU, Dept Chem, 4 Washington Pl, New York, NY 10003 USA
关键词
DENSITY-FUNCTIONAL THEORY; 1ST PRINCIPLES SIMULATIONS; POTENTIAL-ENERGY SURFACE; LIQUID WATER; APPROXIMATION; DEPENDENCE; GROTTHUSS; DIFFUSION; ACCURACY; SPECTRUM;
D O I
10.1021/acs.jctc.0c00558
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Experiment directed simulation (EDS) is a method within a class of techniques seeking to improve molecular simulations by minimally biasing the system Hamiltonian to reproduce certain experimental observables. In a previous application of EDS to ab initio molecular dynamics (AIMD) simulation based on electronic density functional theory (DFT), the AIMD simulations of water were biased to reproduce its experimentally derived solvation structure. In particular, by solely biasing the O-O pair correlation function, other structural and dynamical properties that were not biased were improved. In this work, the hypothesis is tested that directly biasing the O-H pair correlation (and hence the H-O center dot center dot center dot H hydrogen bonding) will provide an even better improvement of DFT-based water properties in AIMD simulations. The logic behind this hypothesis is that for most electronic DFT descriptions of water the hydrogen bonding is known to be deficient due to anomalous charge transfer and over polarization in the DFT. Using recent advances to the EDS learning algorithm, we thus train a minimal bias on AIMD water that reproduces the O-H radial distribution function derived from the highly accurate MB-pol model of water. It is then confirmed that biasing the O-H pair correlation alone can lead to improved AIMD water properties, with structural and dynamical properties even closer to experiment than the previous EDS-AIMD model.
引用
收藏
页码:5675 / 5684
页数:10
相关论文
共 50 条
[31]   On the role of water in the hydrogen bond network in DESs: an ab initio molecular dynamics and quantum mechanical study on the urea-betaine system [J].
Contreras, Renato ;
Lodeiro, Lucas ;
Rozas-Castro, Nicolas ;
Ormazabal-Toledo, Rodrigo .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2021, 23 (03) :1994-2004
[32]   Assessing the accuracy of improved force-matched water models derived from Ab initio molecular dynamics simulations [J].
Koester, Andreas ;
Spura, Thomas ;
Rutkai, Gabor ;
Kessler, Jan ;
Wiebeler, Hendrik ;
Vrabec, Jadran ;
Kuehne, Thomas D. .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2016, 37 (19) :1828-1838
[33]   Reactivity of aldehydes at the air-water interface. Insights from molecular dynamics simulations and ab initio calculations [J].
Martins-Costa, Marilia T. C. ;
Garcia-Prieto, Francisco F. ;
Ruiz-Lopez, Manuel F. .
ORGANIC & BIOMOLECULAR CHEMISTRY, 2015, 13 (06) :1673-1679
[34]   Potential of hydrogen bond in water. Comparison of the theory with vibrational spectra and results of molecular dynamics simulations [J].
Efimov, Yuri Ya. ;
Naberukhin, Yuri I. .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2011, 78 (02) :617-623
[35]   Ab Initio Simulations of Water Dynamics in Aqueous TMAO Solutions: Temperature and Concentration Effects [J].
Stirnemann, Guillaume ;
Duboue-Dijon, Elise ;
Laage, Damien .
JOURNAL OF PHYSICAL CHEMISTRY B, 2017, 121 (49) :11189-11197
[36]   An ab initio quantum mechanical charge field molecular dynamics simulation of hydrogen peroxide in water [J].
Moin, Syed Tarique ;
Hofer, Thomas S. ;
Randolf, Bernhard R. ;
Rode, Bernd M. .
COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2012, 980 :15-22
[37]   The structure of water-methanol mixtures under an electric field: Ab initio molecular dynamics simulations [J].
He, Jun ;
Di Noto, Vito ;
Paddison, Stephen J. .
CHEMICAL PHYSICS LETTERS, 2015, 635 :99-106
[38]   Ab initio molecular dynamics simulation of liquid water by quantum Monte Carlo [J].
Zen, Andrea ;
Luo, Ye ;
Mazzola, Guglielmo ;
Guidoni, Leonardo ;
Sorella, Sandro .
JOURNAL OF CHEMICAL PHYSICS, 2015, 142 (14)
[39]   Non-equilibrium dynamics in disordered materials: ab initio molecular dynamics simulations [J].
Ohmura, Satoshi ;
Nagaya, Kiyonobu ;
Shimojo, Fuyuki ;
Yao, Makoto .
PROCEEDINGS FOR THE XV LIQUID AND AMORPHOUS METALS (LAM-15) INTERNATIONAL CONFERENCE, 2015, 1673
[40]   Anisotropic structure and dynamics of the solvation shell of a benzene solute in liquid water from ab initio molecular dynamics simulations [J].
Choudhary, Ashu ;
Chandra, Amalendu .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2016, 18 (08) :6132-6145