Mapping and analysis of phosphorylation sites: a quick guide for cell biologists

被引:173
作者
Dephoure, Noah [1 ]
Gould, Kathleen L. [2 ]
Gygi, Steven P. [1 ]
Kellogg, Douglas R. [3 ]
机构
[1] Harvard Univ, Dept Cell Biol, Sch Med, Boston, MA 02115 USA
[2] Vanderbilt Univ, Med Ctr, Dept Cell & Dev Biol, Nashville, TN 37232 USA
[3] Univ Calif Santa Cruz, Dept Mol Cell & Dev Biol, Santa Cruz, CA 95064 USA
关键词
MASS-SPECTROMETRY; SACCHAROMYCES-CEREVISIAE; PROTEIN-PHOSPHORYLATION; WIDE PREDICTION; TANDEM; IDENTIFICATION; PROTEOMICS; STRATEGY; COMPLEX; BINDING;
D O I
10.1091/mbc.E12-09-0677
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
A mechanistic understanding of signaling networks requires identification and analysis of phosphorylation sites. Mass spectrometry offers a rapid and highly sensitive approach to mapping phosphorylation sites. However, mass spectrometry has significant limitations that must be considered when planning to carry out phosphorylation-site mapping. Here we provide an overview of key information that should be taken into consideration before beginning phosphorylation-site analysis, as well as a step-by-step guide for carrying out successful experiments.
引用
收藏
页码:535 / 542
页数:8
相关论文
共 55 条
[1]   A probability-based approach for high-throughput protein phosphorylation analysis and site localization [J].
Beausoleil, Sean A. ;
Villen, Judit ;
Gerber, Scott A. ;
Rush, John ;
Gygi, Steven P. .
NATURE BIOTECHNOLOGY, 2006, 24 (10) :1285-1292
[2]   Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics [J].
Boersema, Paul J. ;
Raijmakers, Reinout ;
Lemeer, Simone ;
Mohammed, Shabaz ;
Heck, Albert J. R. .
NATURE PROTOCOLS, 2009, 4 (04) :484-494
[3]  
Boyle WJ., 1991, METHOD ENZYMOL, V201, P110
[4]  
CHOI KY, 1994, CELL, V78, P499
[5]   DIVERSE MITOGENIC AGENTS INDUCE THE PHOSPHORYLATION OF 2 RELATED 42,000-DALTON PROTEINS ON TYROSINE IN QUIESCENT CHICK-CELLS [J].
COOPER, JA ;
SEFTON, BM ;
HUNTER, T .
MOLECULAR AND CELLULAR BIOLOGY, 1984, 4 (01) :30-37
[6]   TANDEM: matching proteins with tandem mass spectra [J].
Craig, R ;
Beavis, RC .
BIOINFORMATICS, 2004, 20 (09) :1466-1467
[7]   Scaffold proteins in MAP kinase signaling: more than simple passive activating platforms [J].
Dard, N ;
Peter, M .
BIOESSAYS, 2006, 28 (02) :146-156
[8]   THE WEE1 PROTEIN-KINASE REGULATES T14 PHOSPHORYLATION OF FISSION YEAST CDC2 [J].
DENHAESE, GJ ;
WALWORTH, N ;
CARR, AM ;
GOULD, KL .
MOLECULAR BIOLOGY OF THE CELL, 1995, 6 (04) :371-385
[9]   ELM-the database of eukaryotic linear motifs [J].
Dinkel, Holger ;
Michael, Sushama ;
Weatheritt, Robert J. ;
Davey, Norman E. ;
Van Roey, Kim ;
Altenberg, Brigitte ;
Toedt, Grischa ;
Uyar, Bora ;
Seiler, Markus ;
Budd, Aidan ;
Joedicke, Lisa ;
Dammert, Marcel A. ;
Schroeter, Christian ;
Hammer, Maria ;
Schmidt, Tobias ;
Jehl, Peter ;
McGuigan, Caroline ;
Dymecka, Magdalena ;
Chica, Claudia ;
Luck, Katja ;
Via, Allegra ;
Chatr-Aryamontri, Andrew ;
Haslam, Niall ;
Grebnev, Gleb ;
Edwards, Richard J. ;
Steinmetz, Michel O. ;
Meiselbach, Heike ;
Diella, Francesca ;
Gibson, Toby J. .
NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D242-D251
[10]   The FHA domain is a modular phosphopeptide recognition motif [J].
Durocher, D ;
Henckel, J ;
Fersht, AR ;
Jackson, SP .
MOLECULAR CELL, 1999, 4 (03) :387-394