The Transcriptional Regulatory Network of Proneural Glioma Determines the Genetic Alterations Selected during Tumor Progression

被引:42
作者
Sonabend, Adam M. [1 ]
Bansal, Mukesh [4 ,6 ]
Guarnieri, Paolo [4 ,6 ]
Lei, Liang [2 ]
Amendolara, Benjamin [1 ]
Soderquist, Craig [2 ]
Leung, Richard [2 ]
Yun, Jonathan [1 ]
Kennedy, Benjamin [1 ]
Sisti, Julia [1 ]
Bruce, Samuel [1 ]
Bruce, Rachel [1 ]
Shakya, Reena [9 ]
Ludwig, Thomas [9 ]
Rosenfeld, Steven [10 ]
Sims, Peter A. [3 ,4 ]
Bruce, Jeffrey N. [1 ]
Califano, Andrea [3 ,4 ,5 ,6 ,7 ,8 ]
Canoll, Peter [1 ,2 ]
机构
[1] Columbia Univ, Dept Neurosurg, Gabriele Bartoli Brain Tumor Lab, New York, NY 10032 USA
[2] Columbia Univ, Dept Pathol & Cell Biol, New York, NY 10032 USA
[3] Columbia Univ, Med Ctr, Dept Biochem & Mol Biophys, New York, NY 10032 USA
[4] Columbia Univ, Dept Syst Biol, New York, NY 10032 USA
[5] Columbia Univ, Dept Biomed Informat, New York, NY 10032 USA
[6] Columbia Univ, Ctr Computat Biol & Bioinformat, New York, NY 10032 USA
[7] Columbia Univ, Inst Canc Genet, New York, NY 10032 USA
[8] Columbia Univ, Herbert Irving Comprehens Canc Ctr, New York, NY 10032 USA
[9] Ohio State Univ, Med Ctr, Dept Mol & Cellular Biochem, Columbus, OH 43210 USA
[10] Cleveland Clin, Brain Tumor & Neurooncol Ctr, Cleveland, OH 44106 USA
关键词
COMPARATIVE GENOMIC HYBRIDIZATION; BREAST-TUMORS; CELL-LINE; GLIOBLASTOMA; P53; PATHWAYS; OLIGODENDROGLIOMAS; PROLIFERATION; ABNORMALITIES; PROGENITORS;
D O I
10.1158/0008-5472.CAN-13-2150
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Proneural glioblastoma is defined by an expression pattern resembling that of oligodendrocyte progenitor cells and carries a distinctive set of genetic alterations. Whether there is a functional relationship between the proneural phenotype and the associated genetic alterations is unknown. To evaluate this possible relationship, we performed a longitudinal molecular characterization of tumor progression in a mouse model of proneural glioma. In this setting, the tumors acquired remarkably consistent genetic deletions at late stages of progression, similar to those deleted in human proneural glioblastoma. Further investigations revealed that p53 is a master regulator of the transcriptional network underlying the proneural phenotype. This p53-centric transcriptional network and its associated phenotype were observed at both the early and late stages of progression, and preceded the proneural-specific deletions. Remarkably, deletion of p53 at the time of tumor initiation obviated the acquisition of later deletions, establishing a link between the proneural transcriptional network and the subtype-specific deletions selected during glioma progression. (c) 2014 AACR.
引用
收藏
页码:1440 / 1451
页数:12
相关论文
共 45 条
[1]   A Genetic Screen Identifies TCF3/E2A and TRIAP1 as Pathway-Specific Regulators of the Cellular Response to p53 Activation [J].
Andrysik, Zdenek ;
Kim, Jihye ;
Tan, Aik Choon ;
Espinosa, Joaquin M. .
CELL REPORTS, 2013, 3 (05) :1346-1354
[2]   Genetic alterations associated with acquired temozolomide resistance in SNB-19, a human glioma cell line [J].
Auger, Nathalie ;
Thillet, Joelle ;
Wanherdrick, Krystell ;
Idbaih, Ahmed ;
Legrier, Marie-Emmanuelle ;
Dutrillaux, Bernard ;
Sanson, Marc ;
Poupon, Marie-France .
MOLECULAR CANCER THERAPEUTICS, 2006, 5 (09) :2182-2192
[3]   PLATELET-DERIVED GROWTH-FACTOR IS A MITOGEN FOR GLIAL BUT NOT FOR NEURONAL RAT-BRAIN CELLS-INVITRO [J].
BESNARD, F ;
PERRAUD, F ;
SENSENBRENNER, M ;
LABOURDETTE, G .
NEUROSCIENCE LETTERS, 1987, 73 (03) :287-292
[4]   Mutations in CIC and FUBP1 Contribute to Human Oligodendroglioma [J].
Bettegowda, Chetan ;
Agrawal, Nishant ;
Jiao, Yuchen ;
Sausen, Mark ;
Wood, Laura D. ;
Hruban, Ralph H. ;
Rodriguez, Fausto J. ;
Cahill, Daniel P. ;
McLendon, Roger ;
Riggins, Gregory ;
Velculescu, Victor E. ;
Oba-Shinjo, Sueli Mieko ;
Marie, Suely Kazue Nagahashi ;
Vogelstein, Bert ;
Bigner, Darell ;
Yan, Hai ;
Papadopoulos, Nickolas ;
Kinzler, Kenneth W. .
SCIENCE, 2011, 333 (6048) :1453-1455
[5]   Glioblastoma Subclasses Can Be Defined by Activity among Signal Transduction Pathways and Associated Genomic Alterations [J].
Brennan, Cameron ;
Momota, Hiroyuki ;
Hambardzumyan, Dolores ;
Ozawa, Tatsuya ;
Tandon, Adesh ;
Pedraza, Alicia ;
Holland, Eric .
PLOS ONE, 2009, 4 (11)
[6]   A transcriptome database for astrocytes, neurons, and oligodendrocytes: A new resource for understanding brain development and function [J].
Cahoy, John D. ;
Emery, Ben ;
Kaushal, Amit ;
Foo, Lynette C. ;
Zamanian, Jennifer L. ;
Christopherson, Karen S. ;
Xing, Yi ;
Lubischer, Jane L. ;
Krieg, Paul A. ;
Krupenko, Sergey A. ;
Thompson, Wesley J. ;
Barres, Ben A. .
JOURNAL OF NEUROSCIENCE, 2008, 28 (01) :264-278
[7]   GGF/neuregulin is a neuronal signal that promotes the proliferation and survival and inhibits the differentiation of oligodendrocyte progenitors [J].
Canoll, PD ;
Musacchio, JM ;
Hardy, R ;
Reynolds, R ;
Marchionni, MA ;
Salzer, JL .
NEURON, 1996, 17 (02) :229-243
[8]   Comprehensive genomic characterization defines human glioblastoma genes and core pathways [J].
Chin, L. ;
Meyerson, M. ;
Aldape, K. ;
Bigner, D. ;
Mikkelsen, T. ;
VandenBerg, S. ;
Kahn, A. ;
Penny, R. ;
Ferguson, M. L. ;
Gerhard, D. S. ;
Getz, G. ;
Brennan, C. ;
Taylor, B. S. ;
Winckler, W. ;
Park, P. ;
Ladanyi, M. ;
Hoadley, K. A. ;
Verhaak, R. G. W. ;
Hayes, D. N. ;
Spellman, Paul T. ;
Absher, D. ;
Weir, B. A. ;
Ding, L. ;
Wheeler, D. ;
Lawrence, M. S. ;
Cibulskis, K. ;
Mardis, E. ;
Zhang, Jinghui ;
Wilson, R. K. ;
Donehower, L. ;
Wheeler, D. A. ;
Purdom, E. ;
Wallis, J. ;
Laird, P. W. ;
Herman, J. G. ;
Schuebel, K. E. ;
Weisenberger, D. J. ;
Baylin, S. B. ;
Schultz, N. ;
Yao, Jun ;
Wiedemeyer, R. ;
Weinstein, J. ;
Sander, C. ;
Gibbs, R. A. ;
Gray, J. ;
Kucherlapati, R. ;
Lander, E. S. ;
Myers, R. M. ;
Perou, C. M. ;
McLendon, Roger .
NATURE, 2008, 455 (7216) :1061-1068
[9]   Cooperativity within and among Pten, p53, and Rb Pathways Induces High-Grade Astrocytoma in Adult Brain [J].
Chow, Lionel M. L. ;
Endersby, Raelene ;
Zhu, Xiaoyan ;
Rankin, Sherri ;
Qu, Chunxu ;
Zhang, Junyuan ;
Broniscer, Alberto ;
Ellison, David W. ;
Baker, Suzanne J. .
CANCER CELL, 2011, 19 (03) :305-316
[10]   The Proneural Molecular Signature Is Enriched in Oligodendrogliomas and Predicts Improved Survival among Diffuse Gliomas [J].
Cooper, Lee A. D. ;
Gutman, David A. ;
Long, Qi ;
Johnson, Brent A. ;
Cholleti, Sharath R. ;
Kurc, Tahsin ;
Saltz, Joel H. ;
Brat, Daniel J. ;
Moreno, Carlos S. .
PLOS ONE, 2010, 5 (09) :1-9