The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community

被引：37

作者：

Darde, Thomas A. ^{[1
,2
]}

Sallou, Olivier ^{[2
]}

Becker, Emmanuelle ^{[1
]}

Evrard, Bertrand ^{[1
]}

Monjeaud, Cyril ^{[2
]}

Le Bras, Yvan ^{[2
]}

Jegou, Bernard ^{[1
,3
]}

Collin, Olivier ^{[2
]}

Rolland, Antoine D. ^{[1
]}

Chalmel, Frederic ^{[1
]}

机构：

[1] Univ Rennes 1, INSERM, U1085, Irset, F-35042 Rennes, France

[2] Univ Rennes 1, Inst Rech Informat & Syst Aleatoires IRISA INRIA, GenOuest Platform, F-35042 Rennes, France

[3] Ecole Hautes Etud Sante Publ, F-35043 Rennes, France

来源：

NUCLEIC ACIDS RESEARCH | 2015年 / 43卷 / W1期

关键词：

COMPREHENSIVE SAGE DATABASE; UCSC GENOME BROWSER; TRANSCRIPT DISCOVERY; EXPRESSION; RESOURCE; PROMOTERS; NGSMETHDB; GALAXY; ATLAS;

D O I：

10.1093/nar/gkv345

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

We report the development of the ReproGenomics Viewer (RGV), amulti- and cross-species working environment for the visualization, mining and comparison of published omics data sets for the reproductive science community. The system currently embeds 15 published data sets related to gametogenesis from nine model organisms. Data sets have been curated and conveniently organized into broad categories including biological topics, technologies, species and publications. RGV's modular design for both organisms and genomic tools enables users to upload and compare their data with that from the data sets embedded in the system in a cross-species manner. The RGV is freely available at http://rgv.genouest.org.

引用

页码：W109 / W116

页数：8

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