Identification of Target Genes at Juvenile Idiopathic Arthritis GWAS Loci in Human Neutrophils

被引:4
作者
Li, Junyi [1 ]
Yuan, Xiucheng [1 ]
March, Michael E. [2 ]
Yao, Xueming [1 ]
Sun, Yan [1 ]
Chang, Xiao [2 ]
Hakonarson, Hakon [2 ,3 ,4 ]
Xia, Qianghua [1 ]
Meng, Xinyi [1 ]
Li, Jin [1 ]
机构
[1] Tianjin Med Univ, Tianjin Key Lab Med Epigenet, Collaborat Innovat Ctr Tianjin Med Epigenet 2011, Dept Cell Biol, Tianjin, Peoples R China
[2] Childrens Hosp Philadelphia, Ctr Appl Genom, Philadelphia, PA 19104 USA
[3] Childrens Hosp Philadelphia, Div Human Genet, Philadelphia, PA 19104 USA
[4] Univ Penn, Dept Pediat, Perelman Sch Med, Philadelphia, PA 19104 USA
来源
FRONTIERS IN GENETICS | 2019年 / 10卷
基金
中国国家自然科学基金;
关键词
juvenile idiopathic arthritis; target gene identification; epigenetic regulation; protein-protein interaction; pathway enrichment; GENOME-WIDE ASSOCIATION; RHEUMATOID-ARTHRITIS; SUSCEPTIBILITY LOCUS; CARDIOVASCULAR RISK; EXPRESSION; METAANALYSIS; VARIANTS; REGIONS; COMPLEX; SETS;
D O I
10.3389/fgene.2019.00181
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Juvenile idiopathic arthritis (JIA) is the most common chronic rheumatic disease among children which could cause severe disability. Genomic studies have discovered substantial number of risk loci for JIA, however, the mechanism of how these loci affect JIA development is not fully understood. Neutrophil is an important cell type involved in autoimmune diseases. To better understand the biological function of genetic loci in neutrophils during JIA development, we took an integrated multi-omics approach to identify target genes at JIA risk loci in neutrophils and constructed a protein-protein interaction network via a machine learning approach. We identified genes likely to be JIA risk loci targeted genes in neutrophils which could contribute to JIA development.
引用
收藏
页数:7
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