Availability of public goods shapes the evolution of competing metabolic strategies

被引:128
作者
Bachmann, Herwig [1 ,2 ,3 ]
Fischlechner, Martin [4 ,5 ]
Rabbers, Iraes [1 ]
Barfa, Nakul [1 ,2 ]
dos Santos, Filipe Branco [1 ,2 ]
Molenaar, Douwe [1 ,2 ]
Teusink, Bas [1 ,2 ]
机构
[1] Vrije Univ Amsterdam, Amsterdam Inst Mol Med & Syst, Syst Bioinformat Ctr Integrat Bioinformat, NL-1081 HV Amsterdam, Netherlands
[2] Netherlands Consortium Syst Biol, Kluyver Ctr Genom Ind Fermentat, NL-2628 BC Delft, Netherlands
[3] NIZO Food Res & Top Inst Food & Nutr, NL-6718 ZB Ede, Netherlands
[4] Univ Southampton, Southampton SO17 1BJ, Hants, England
[5] Univ Southampton, Inst Life Sci, Southampton SO17 1BJ, Hants, England
关键词
metabolic engineering; group selection; r/K selection; droplets; microbial diversity; LACTOCOCCUS-LACTIS; DEVELOPMENTAL CONSTRAINTS; EXPERIMENTAL POPULATIONS; LACTATE-DEHYDROGENASE; TRADE-OFFS; SELECTION; COOPERATION; TRAGEDY; GROWTH; YIELD;
D O I
10.1073/pnas.1308523110
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Tradeoffs provide a rationale for the outcome of natural selection. A prominent example is the negative correlation between the growth rate and the biomass yield in unicellular organisms. This tradeoff leads to a dilemma, where the optimization of growth rate is advantageous for an individual, whereas the optimization of the biomass yield would be advantageous for a population. High-rate strategies are observed in a broad variety of organisms such as Escherichia coli, yeast, and cancer cells. Growth in suspension cultures favors fast-growing organisms, whereas spatial structure is of importance for the evolution of high-yield strategies. Despite this realization, experimental methods to directly select for increased yield are lacking. We here show that the serial propagation of a microbial population in a water-in-oil emulsion allows selection of strains with increased biomass yield. The propagation in emulsion creates a spatially structured environment where the growth-limiting substrate is privatized for populations founded by individual cells. Experimental evolution of several isogenic Lactococcus lactis strains demonstrated the existence of a tradeoff between growth rate and biomass yield as an apparent Pareto front. The underlying mutations altered glucose transport and led to major shifts between homofermentative and heterofermentative metabolism, accounting for the changes in metabolic efficiency. The results demonstrated the impact of privatizing a public good on the evolutionary outcome between competing metabolic strategies. The presented approach allows the investigation of fundamental questions in biology such as the evolution of cooperation, cell-cell interactions, and the relationships between environmental and metabolic constraints.
引用
收藏
页码:14302 / 14307
页数:6
相关论文
共 45 条
  • [1] Ultrahigh-throughput screening in drop-based microfluidics for directed evolution
    Agresti, Jeremy J.
    Antipov, Eugene
    Abate, Adam R.
    Ahn, Keunho
    Rowat, Amy C.
    Baret, Jean-Christophe
    Marquez, Manuel
    Klibanov, Alexander M.
    Griffiths, Andrew D.
    Weitz, David A.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (09) : 4004 - 4009
  • [2] Microbial domestication signatures of Lactococcus lactis can be reproduced by experimental evolution
    Bachmann, Herwig
    Starrenburg, Marjo J. C.
    Molenaar, Douwe
    Kleerebezem, Michiel
    Vlieg, Johan E. T. van Hylckama
    [J]. GENOME RESEARCH, 2012, 22 (01) : 115 - 124
  • [3] High local substrate availability stabilizes a cooperative trait
    Bachmann, Herwig
    Molenaar, Douwe
    Kleerebezem, Michiel
    Vlieg, Johan E. T. van Hylckama
    [J]. ISME JOURNAL, 2011, 5 (05) : 929 - 932
  • [4] Developmental constraints versus flexibility in morphological evolution
    Beldade, P
    Koops, K
    Brakefield, PM
    [J]. NATURE, 2002, 416 (6883) : 844 - 847
  • [5] An experimental test of evolutionary trade-offs during temperature adaptation
    Bennett, Albert F.
    Lenski, Richard E.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 : 8649 - 8654
  • [6] IS981-mediated adaptive evolution recovers lactate production by ldhB transcription activation in a lactate dehydrogenase-deficient strain of Lactococcus lactis
    Bongers, RS
    Hoefnagel, MHN
    Starrenburg, MJC
    Siemerink, MAJ
    Arends, JGA
    Hugenholtz, J
    Meerebezem, M
    [J]. JOURNAL OF BACTERIOLOGY, 2003, 185 (15) : 4499 - 4507
  • [7] Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment
    Brown, CJ
    Todd, KM
    Rosenzweig, RF
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 1998, 15 (08) : 931 - 942
  • [8] Characterization of the individual glucose uptake systems of Lactococcus lactis: mannose-PTS, cellobiose-PTS and the novel GlcU permease
    Castro, Rute
    Neves, Ana R.
    Fonseca, Luis L.
    Pool, Wietske A.
    Kok, Jan
    Kuipers, Oscar P.
    Santos, Helena
    [J]. MOLECULAR MICROBIOLOGY, 2009, 71 (03) : 795 - 806
  • [9] Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations
    Cooper, Tim F.
    Lenski, Richard E.
    [J]. BMC EVOLUTIONARY BIOLOGY, 2010, 10
  • [10] CHARACTERIZATION OF IS905, A NEW MULTICOPY INSERTION-SEQUENCE IDENTIFIED IN LACTOCOCCI
    DODD, HM
    HORN, N
    GASSON, MJ
    [J]. JOURNAL OF BACTERIOLOGY, 1994, 176 (11) : 3393 - 3396