Random forest machine learning models for interpretable X-ray absorption near-edge structure spectrum-property relationships

被引:122
作者
Torrisi, Steven B. [1 ,2 ]
Carbone, Matthew R. [3 ]
Rohr, Brian A. [1 ]
Montoya, Joseph H. [1 ]
Ha, Yang [4 ]
Yano, Junko [5 ]
Suram, Santosh K. [1 ]
Hung, Linda [1 ]
机构
[1] Toyota Res Inst, Accelerated Mat Design & Discovery, Los Altos, CA 94022 USA
[2] Harvard Univ, Dept Phys, Cambridge, MA 02138 USA
[3] Columbia Univ, Dept Chem, New York, NY 10027 USA
[4] Lawrence Berkeley Natl Lab, Adv Light Source, Berkeley, CA 94720 USA
[5] Lawrence Berkeley Natl Lab, Mol Biophys & Integrated Bioimaging Div, Berkeley, CA 94720 USA
关键词
COORDINATION ENVIRONMENTS; SILICATE-GLASSES; OXIDATION-STATE; XANES SPECTRA; METAL; EXPERIMENTATION; SPECTROSCOPY; CATALYSTS; LIGAND; EXAFS;
D O I
10.1038/s41524-020-00376-6
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
X-ray absorption spectroscopy (XAS) produces a wealth of information about the local structure of materials, but interpretation of spectra often relies on easily accessible trends and prior assumptions about the structure. Recently, researchers have demonstrated that machine learning models can automate this process to predict the coordinating environments of absorbing atoms from their XAS spectra. However, machine learning models are often difficult to interpret, making it challenging to determine when they are valid and whether they are consistent with physical theories. In this work, we present three main advances to the data-driven analysis of XAS spectra: we demonstrate the efficacy of random forests in solving two new property determination tasks (predicting Bader charge and mean nearest neighbor distance), we address how choices in data representation affect model interpretability and accuracy, and we show that multiscale featurization can elucidate the regions and trends in spectra that encode various local properties. The multiscale featurization transforms the spectrum into a vector of polynomial-fit features, and is contrasted with the commonly-used "pointwise" featurization that directly uses the entire spectrum as input. We find that across thousands of transition metal oxide spectra, the relative importance of features describing the curvature of the spectrum can be localized to individual energy ranges, and we can separate the importance of constant, linear, quadratic, and cubic trends, as well as the white line energy. This work has the potential to assist rigorous theoretical interpretations, expedite experimental data collection, and automate analysis of XAS spectra, thus accelerating the discovery of new functional materials.
引用
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页数:11
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