Are unequal clade priors problematic for Bayesian phylogenetics?

[1] Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2003, 20 (02) : 255 - 266

[2] Comparing bootstrap and posterior probability values in the four-taxon case [J]. SYSTEMATIC BIOLOGY, 2003, 52 (04) : 477 - 487

[3] Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2003, 20 (02) : 248 - 254

[4] Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics [J]. SYSTEMATIC BIOLOGY, 2003, 52 (05) : 665 - 673

[5] EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J]. JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) : 368 - 376

[6] FELSENSTEIN J, 1968, THESIS U CHICAGO CHI

[7] Felsenstein Joseph, 2004, Inferring_phylogenies, V2

[8] Goloboff Pablo A., 2005, P148

[9] Geographic origin of human mitochondrial DNA: Accommodating phylogenetic uncertainty and model comparison [J]. SYSTEMATIC BIOLOGY, 2002, 51 (01) : 155 - 165

[10] Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models [J]. SYSTEMATIC BIOLOGY, 2004, 53 (06) : 904 - 913

[1] Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2003, 20 (02) : 255 - 266

[2] Comparing bootstrap and posterior probability values in the four-taxon case [J]. SYSTEMATIC BIOLOGY, 2003, 52 (04) : 477 - 487

[3] Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2003, 20 (02) : 248 - 254

[4] Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics [J]. SYSTEMATIC BIOLOGY, 2003, 52 (05) : 665 - 673

[5] EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J]. JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) : 368 - 376

[6] FELSENSTEIN J, 1968, THESIS U CHICAGO CHI

[7] Felsenstein Joseph, 2004, Inferring_phylogenies, V2

[8] Goloboff Pablo A., 2005, P148

[9] Geographic origin of human mitochondrial DNA: Accommodating phylogenetic uncertainty and model comparison [J]. SYSTEMATIC BIOLOGY, 2002, 51 (01) : 155 - 165

[10] Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models [J]. SYSTEMATIC BIOLOGY, 2004, 53 (06) : 904 - 913