Whole-exome sequencing in adult patients with developmental and epileptic encephalopathy: It is never too late

被引:36
作者
Minardi, Raffaella [1 ]
Licchetta, Laura [1 ,2 ]
Baroni, Maria Chiara [3 ]
Pippucci, Tommaso [4 ]
Stipa, Carlotta [1 ]
Mostacci, Barbara [1 ]
Severi, Giulia [4 ]
Toni, Francesco [1 ]
Bergonzini, Luca [3 ]
Carelli, Valerio [1 ,2 ]
Seri, Marco [4 ]
Tinuper, Paolo [1 ,2 ]
Bisulli, Francesca [1 ,2 ]
机构
[1] Ist Sci Neurol Bologna, Reference Ctr Rare & Complex Epilepsies EpiCARE, IRCCS, Bologna, Italy
[2] Univ Bologna, Dept Biomed & Neuromotor Sci, Bologna, Italy
[3] Univ Bologna, Dept Biomed & Surg Sci DIMEC, Bologna, Italy
[4] Azienda Ospedo Univ Bologna Policlin, UO Genet Med, St Orsola Malpighi, Bologna, Italy
关键词
WES; epilepsy; intellectual disability; genetics; APC2; RARS2;
D O I
10.1111/cge.13823
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Developmental and epileptic encephalopathies (DEE) encompass rare, sporadic neurodevelopmental disorders and usually with pediatric onset. As these conditions are characterized by marked clinical and genetic heterogeneity, whole-exome sequencing (WES) represents the strategy of choice for the molecular diagnosis. While its usefulness is well established in pediatric DEE cohorts, our study is aimed at assessing the WES feasibility in adult DEE patients who experienced a diagnostic odyssey prior to the advent of this technique. We analyzed exomes from 71 unrelated adult DEE patients, consecutively recruited from an Italian cohort for the EPI25 Project. All patients underwent accurate clinical and electrophysiological characterization. An overwhelming percentage (90.1%) had already undergone negative genetic testing. Variants were classified according to the American College of Medical Genetics and Genomics guidelines. WES disclosed 24 (likely) pathogenic variants among 18 patients in epilepsy-related genes with either autosomal dominant,recessive or X-linked inheritance. Ten of these were novel. We obtained a diagnostic yield of 25.3%, higher among patients with brain malformations, early-onset epilepsy and dysmorphisms. Despite a median diagnostic delay of 38.7 years, WES analysis provided the long-awaited diagnosis for 18 adult patients, which also had an impact on the clinical management of 50% of them.
引用
收藏
页码:477 / 485
页数:9
相关论文
共 20 条
[1]   Unexplained early onset epileptic encephalopathy: Exome screening and phenotype expansion [J].
Allen, Nicholas M. ;
Conroy, Judith ;
Shahwan, Amre ;
Lynch, Bryan ;
Correa, Raony G. ;
Pena, Sergio D. J. ;
McCreary, Dara ;
Magalhaes, Tiago R. ;
Ennis, Sean ;
Lynch, Sally A. ;
King, Mary D. .
EPILEPSIA, 2016, 57 (01) :E12-E17
[2]   Loss-of-Function Mutation in APC2 Causes Sotos Syndrome Features [J].
Almuriekhi, Mariam ;
Shintani, Takafumi ;
Fahiminiya, Somayyeh ;
Fujikawa, Akihiro ;
Kuboyama, Kazuya ;
Takeuchi, Yasushi ;
Nawaz, Zafar ;
Nadaf, Javad ;
Kamel, Hussein ;
Kitam, Abu Khadija ;
Samiha, Zaineddin ;
Mahmoud, Laila ;
Ben-Omran, Tawfeg ;
Majewski, Jacek ;
Noda, Masaharu .
CELL REPORTS, 2015, 10 (09) :1585-1598
[3]   Genomic testing and counseling: The contribution of next-generation sequencing to epilepsy genetics [J].
Alsubaie, Lamia ;
Aloraini, Taghrid ;
Amoudi, Manal ;
Swaid, Abdulrahman ;
Eyiad, Wafaa ;
Al Mutairi, Fuad ;
Ababneh, Farouq ;
Alrifai, Muhammad Talal ;
Baarmah, Duaa ;
Altwaijri, Waleed ;
Alotaibi, Naser ;
Harthi, Ashraf ;
Rumayyan, Ahmad ;
Alanazi, Ali ;
Qrimli, Mohammad ;
Alfadhel, Majid ;
Alfares, Ahmed .
ANNALS OF HUMAN GENETICS, 2020, 84 (06) :431-436
[4]   A comparison of genomic diagnostics in adults and children with epilepsy and comorbid intellectual disability [J].
Benson, Katherine A. ;
White, Maire ;
Allen, Nicholas M. ;
Byrne, Susan ;
Carton, Robert ;
Comerford, Elizabeth ;
Costello, Daniel ;
Doherty, Colin ;
Dunleavey, Brendan ;
El-Naggar, Hany ;
Gangadharan, Nisha ;
Heavin, Sinead ;
Kearney, Hugh ;
Lench, Nicholas J. ;
Lynch, John ;
McCormack, Mark ;
O'Regan, Mary ;
Podesta, Karl ;
Power, Kevin ;
Rogers, Anthony S. ;
Steward, Charles A. ;
Sweeney, Brian ;
Webb, David ;
Fitzsimons, Mary ;
Greally, Marie ;
Delanty, Norman ;
Cavalleri, Gianpiero L. .
EUROPEAN JOURNAL OF HUMAN GENETICS, 2020, 28 (08) :1066-1077
[5]   Array comparative genomic hybridization: Results from an adult population with drug-resistant epilepsy and co-morbidities [J].
Galizia, Elizabeth C. ;
Srikantha, Maithili ;
Palmer, Rodger ;
Waters, Jonathan J. ;
Lench, Nicholas ;
Ogilvie, Caroline Mackie ;
Kasperaviciute, Dalia ;
Nashef, Lina ;
Sisodiya, Sanjay M. .
EUROPEAN JOURNAL OF MEDICAL GENETICS, 2012, 55 (05) :342-348
[6]   De Novo Pathogenic Variants in CACNA1E Cause Developmental and Epileptic Encephalopathy with Contractures, Macrocephaly, and Dyskinesias [J].
Helbig, Katherine L. ;
Lauerer, Robert J. ;
Bahr, Jacqueline C. ;
Souza, Ivana A. ;
Myers, Candace T. ;
Uysal, Betuel ;
Schwarz, Niklas ;
Gandini, Maria A. ;
Huang, Sun ;
Keren, Boris ;
Mignot, Cyril ;
Afenjar, Alexandra ;
de Villemeur, Thierry Billette ;
Heron, Delphine ;
Nava, Caroline ;
Valence, Stephanie ;
Buratti, Julien ;
Fagerberg, Christina R. ;
Soerensen, Kristina P. ;
Kibaek, Maria ;
Kamsteeg, Erik-Jan ;
Koolen, David A. ;
Gunning, Boudewijn ;
Schelhaas, H. Jurgen ;
Kruer, Michael C. ;
Fox, Jordana ;
Bakhtiari, Somayeh ;
Jarrar, Randa ;
Padilla-Lopez, Sergio ;
Lindstrom, Kristin ;
Jin, Sheng Chih ;
Zeng, Xue ;
Bilguvar, Kaya ;
Papavasileiou, Antigone ;
Xin, Qinghe ;
Zhu, Changlian ;
Boysen, Katja ;
Vairo, Filippo ;
Lanpher, Brendan C. ;
Klee, Eric W. ;
Tillema, Jan-Mendelt ;
Payne, Eric T. ;
Cousin, Margot A. ;
Kruisselbrink, Teresa M. ;
Wick, Myra J. ;
Baker, Joshua ;
Haan, Eric ;
Smith, Nicholas ;
Corbett, Mark A. ;
MacLennan, Alastair H. .
AMERICAN JOURNAL OF HUMAN GENETICS, 2018, 103 (05) :666-678
[7]   Primrose syndrome: a phenotypic comparison of patients with a ZBTB20 missense variant versus a 3q13.31 microdeletion including ZBTB20 [J].
Juven, Aurelien ;
Nambot, Sophie ;
Piton, Amelie ;
Jean-Marcais, Nolwenn ;
Masurel, Alice ;
Callier, Patrick ;
Marle, Nathalie ;
Mosca-Boidron, Anne-Laure ;
Kuentz, Paul ;
Philippe, Christophe ;
Chevarin, Martin ;
Duffourd, Yannis ;
Gautier, Elodie ;
Munnich, Arnold ;
Rio, Marlene ;
Rondeau, Sophie ;
El Chehadeh, Salima ;
Schaefer, Elise ;
Gerard, Benedicte ;
Bouquillon, Sonia ;
Delorme, Catherine Vincent ;
Francannet, Christine ;
Laffargue, Fanny ;
Gouas, Laetitia ;
Isidor, Bertrand ;
Vincent, Marie ;
Blesson, Sophie ;
Giuliano, Fabienne ;
Pichon, Olivier ;
Le Caignec, Cedric ;
Journel, Hubert ;
Perrin-Sabourin, Laurence ;
Fabre-Teste, Jennifer ;
Martin, Dominique ;
Vieville, Gaelle ;
Dieterich, Klaus ;
Lacombe, Didier ;
Denomme-Pichon, Anne-Sophie ;
Thauvin-Robinet, Christel ;
Faivre, Laurence .
EUROPEAN JOURNAL OF HUMAN GENETICS, 2020, 28 (08) :1044-1055
[8]   Complete mitochondrial genome of Leptaulax koreanus (Coleoptera: Passalidae), a Korean endemic bess beetle [J].
Lee, Seung-Gyu ;
Choi, Kyoung Su ;
Kim, Chang-Jun ;
Jeon, Hyung-Bae ;
Kim, Il-Kwon .
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01) :105-106
[9]   Neurobehavioral phenotype observed in KBG syndrome caused by ANKRD11 mutations [J].
Lo-Castro, Adriana ;
Brancati, Francesco ;
Digilio, Maria Cristina ;
Garaci, Francesco Giuseppe ;
Bollero, Patrizio ;
Alfieri, Paolo ;
Curatolo, Paolo .
AMERICAN JOURNAL OF MEDICAL GENETICS PART B-NEUROPSYCHIATRIC GENETICS, 2013, 162B (01) :17-23
[10]   Epilepsy genetics: Current knowledge, applications, and future directions [J].
Myers, K. A. ;
Johnstone, D. L. ;
Dyment, D. A. .
CLINICAL GENETICS, 2019, 95 (01) :95-111