The Independent Gradient Model: A New Approach for Probing Strong and Weak Interactions in Molecules from Wave Function Calculations

被引:362
作者
Lefebvre, Corentin [1 ]
Khartabil, Hassan [1 ,2 ]
Boisson, Jean-Charles [3 ]
Contreras-Garcia, Julia [4 ,5 ]
Piquemal, Jean-Philip [4 ,5 ]
Henon, Eric [1 ]
机构
[1] Univ Reims, Inst Chim Mol Reims, CNRS, UMR 7312, BP 39, F-51687 Reims 2, France
[2] Univ Reims, Campus Univ Ardennes,4 Bd Jean Delautre, F-08000 Charleville Mezieres, France
[3] Univ Reims, CReSTIC EA 3804, BP 39, F-51687 Reims 2, France
[4] UPMC, Sorbonne Univ, Chim Theor Lab, 4 Pl Jussieu, F-75252 Paris 05, France
[5] CNRS, UMR 7616, 4 Pl Jussieu, F-75252 Paris 05, France
关键词
electron density; independent gradient model; interactions; noncovalent interactions; quantum chemistry; REVEALING NONCOVALENT INTERACTIONS; REDUCED DENSITY GRADIENT; POPULATION ANALYSIS; ELECTRON; MECHANISMS;
D O I
10.1002/cphc.201701325
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Extraction of the chemical interaction signature from local descriptors based on electron density (ED) is still a fruitful field of development in chemical interpretation. In a previous work that used promolecular ED (frozen ED), the new descriptor, g , was defined. It represents the difference between a virtual upper limit of the ED gradient (delta IGM) that represents a noninteracting system and the true ED gradient (>delta). It can be seen as a measure of electron sharing brought by ED contragradience. A compelling feature of this model is to provide an automatic workflow that extracts the signature of interactions between selected groups of atoms. As with the noncovalent interaction (NCI) approach, it provides chemists with a visual understanding of the interactions present in chemical systems. delta IGM is achieved simply by using absolute values upon summing the individual gradient contributions that make up the total ED gradient. Hereby, we extend this model to relaxed ED calculated from a wave function. To this end, we formulated gradient-based partitioning (GBP) to assess the contribution of each orbital to the total ED gradient. We highlight these new possibilities across two prototypical examples of organic chemistry: the unconventional hexamethylbenzene dication, with a hexa-coordinated carbon atom, and -thioaminoacrolein. It will be shown how a bond-by-bond picture can be obtained from a wave function, which opens the way to monitor specific interactions along reaction paths.
引用
收藏
页码:724 / 735
页数:12
相关论文
共 34 条
[1]  
[Anonymous], 1994, Atoms in Molecules: A Quantum Theory
[2]  
[Anonymous], 2017, ANGEW CHEM
[3]   The Houk-List transition states for organocatalytic mechanisms revisited [J].
Armstrong, Alan ;
Boto, Roberto A. ;
Dingwall, Paul ;
Contreras-Garcia, Julia ;
Harvey, Matt J. ;
Mason, Nicholas J. ;
Rzepa, Henry S. .
CHEMICAL SCIENCE, 2014, 5 (05) :2057-2071
[4]   The Localized Electrons Detector as an Ab Initio Representation of Molecular Structures [J].
Bohorquez, Hugo J. ;
Matta, Cherif F. ;
Boyd, Russell J. .
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2010, 110 (13) :2418-2425
[5]   A localized electrons detector for atomic and molecular systems [J].
Bohorquez, Hugo J. ;
Boyd, Russell J. .
THEORETICAL CHEMISTRY ACCOUNTS, 2010, 127 (04) :393-400
[6]   Labelling Herceptin with a novel oxaliplatin derivative: a computational approach towards the selective drug delivery [J].
Ceron-Carrasco, Jose P. ;
Cerezo, Javier ;
Requena, Alberto ;
Zuniga, Jose ;
Contreras-Garcia, Julia ;
Chavan, Sonali ;
Manrubia-Cobo, Miguel ;
Perez-Sanchez, Horacio .
JOURNAL OF MOLECULAR MODELING, 2014, 20 (09) :1-8
[7]   Analysis of Hydrogen-Bond Interaction Potentials from the Electron Density: Integration of Noncovalent Interaction Regions [J].
Contreras-Garcia, Julia ;
Yang, Weitao ;
Johnson, Erin R. .
JOURNAL OF PHYSICAL CHEMISTRY A, 2011, 115 (45) :12983-12990
[8]   NCIPLOT: A Program for Plotting Noncovalent Interaction Regions [J].
Contreras-Garcia, Julia ;
Johnson, Erin R. ;
Keinan, Shahar ;
Chaudret, Robin ;
Piquemal, Jean-Philip ;
Beratan, David N. ;
Yang, Weitao .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2011, 7 (03) :625-632
[9]   The Reduced Density Gradient in Atoms [J].
del Campo, Jorge M. ;
Gazquez, Jose L. ;
Alvarez-Mendez, Rodrigo J. ;
Vela, Alberto .
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2012, 112 (22) :3594-3598
[10]   Coupling Quantum Interpretative Techniques: Another Look at Chemical Mechanisms in Organic Reactions [J].
Gillet, Natacha ;
Chaudret, Robin ;
Contreras-Garcia, Julia ;
Yang, Weitao ;
Silvi, Bernard ;
Piquemal, Jean-Philip .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2012, 8 (11) :3993-3997