Rate limit of protein elastic response is tether dependent

被引:57
作者
Berkovich, Ronen [1 ]
Hermans, Rodolfo I. [1 ,2 ]
Popa, Ionel [1 ]
Stirnemann, Guillaume [3 ]
Garcia-Manyes, Sergi [1 ,4 ,5 ]
Berne, Bruce J. [3 ]
Fernandez, Julio M. [1 ]
机构
[1] Columbia Univ, Dept Biol Sci, New York, NY 10027 USA
[2] UCL, London Ctr Nanotechnol, London WC1H 0AH, England
[3] Columbia Univ, Dept Chem, New York, NY 10027 USA
[4] Kings Coll London, Dept Phys, London WC2R 2LS, England
[5] Kings Coll London, Randall Div Cell & Mol Biophys, London WC2R 2LS, England
基金
美国国家科学基金会; 瑞士国家科学基金会; 美国国家卫生研究院;
关键词
force spectroscopy; protein diffusion; viscoelasticity; single molecule; POLYPEPTIDE-CHAINS; DIFFUSION-MODEL; BROWNIAN-MOTION; FORCE; DYNAMICS; TITIN; SPECTROSCOPY; KINETICS; COLLAPSE; AFM;
D O I
10.1073/pnas.1212167109
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The elastic restoring force of tissues must be able to operate over the very wide range of loading rates experienced by living organisms. It is surprising that even the fastest events involving animal muscle tissues do not surpass a few hundred hertz. We propose that this limit is set in part by the elastic dynamics of tethered proteins extending and relaxing under a changing load. Here we study the elastic dynamics of tethered proteins using a fast force spectrometer with sub-millisecond time resolution, combined with Brownian and Molecular Dynamics simulations. We show that the act of tethering a polypeptide to an object, an inseparable part of protein elasticity in vivo and in experimental setups, greatly reduces the attempt frequency with which the protein samples its free energy. Indeed, our data shows that a tethered polypeptide can traverse its free-energy landscape with a surprisingly low effective diffusion coefficient D-eff similar to 1,200 nm(2)/s. By contrast, our Molecular Dynamics simulations show that diffusion of an isolated protein under force occurs at D-eff similar to 10(8) nm2/s. This discrepancy is attributed to the drag force caused by the tethering object. From the physiological time scales of tissue elasticity, we calculate that tethered elastic proteins equilibrate in vivo with D-eff similar to 10(4)-10(6) nm2/s which is two to four orders magnitude smaller than the values measured for untethered proteins in bulk.
引用
收藏
页码:14416 / 14421
页数:6
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