Understanding osteoarthritis pathogenesis: a multiomics system-based approach

被引:43
作者
Ratneswaran, Anusha [1 ,2 ]
Rockel, Jason S. [1 ,2 ]
Kapoor, Mohit [1 ,2 ,3 ,4 ]
机构
[1] Univ Hlth Network, Krembil Res Inst, Arthrit Program, Toronto, ON, Canada
[2] Univ Hlth Network, Krembil Res Inst, Div Genet & Dev, Toronto, ON, Canada
[3] Univ Toronto, Dept Surg, Toronto, ON, Canada
[4] Univ Toronto, Dept Lab Med & Pathobiol, Toronto, ON, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
multiomics; next-generation sequencing; osteoarthritis; systems biology; WIDE DNA METHYLATION; SYNOVIAL-FLUID; ARTICULAR CHONDROCYTES; KNEE OSTEOARTHRITIS; PROTEOMIC ANALYSIS; GENE-EXPRESSION; CARTILAGE; REVEALS; PATHWAYS; TRANSCRIPTOME;
D O I
10.1097/BOR.0000000000000680
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Purpose of review Osteoarthritis is a heterogeneous, multifactorial condition regulated by complex biological interactions at multiple levels. Comprehensive understanding of these regulatory interactions is required to develop feasible advances to improve patient outcomes. Improvements in technology have made extensive genomic, transcriptomic, epigenomic, proteomic, and metabolomic profiling possible. This review summarizes findings over the past 20 months related to omics technologies in osteoarthritis and examines how using a multiomics approach is necessary for advancing our understanding of osteoarthritis as a disease to improve precision osteoarthritis treatments. Recent findings Using the search terms 'genomics' or 'transcriptomics' or 'epigenomics' or 'proteomics' or 'metabolomics' and 'osteoarthritis' from January 1, 2018 to August 31, 2019, we identified advances in omics approaches applied to osteoarthritis. Trends include untargeted whole genome, transcriptome, proteome, and metabolome analyses leading to identification of novel molecular signatures, cell subpopulations and multiomics validation approaches. To address the complexity of osteoarthritis, integration of multitissue analyses by multiomics approaches with the inclusion of longitudinal clinical data is necessary for a comprehensive understanding of the disease process, and for appropriate development of efficacious diagnostics, prognostics, and biotherapeutics.
引用
收藏
页码:80 / 91
页数:12
相关论文
共 98 条
[21]   Emerging targets in osteoarthritis therapy [J].
Goldring, Mary B. ;
Berenbaum, Francis .
CURRENT OPINION IN PHARMACOLOGY, 2015, 22 :51-63
[22]   Inhibition of early response genes prevents changes in global joint metabolomic profiles in mouse post-traumatic osteoarthritis [J].
Haudenschild, D. R. ;
Carlson, A. K. ;
Zignego, D. L. ;
Yik, J. H. N. ;
Hilmer, J. K. ;
June, R. K. .
OSTEOARTHRITIS AND CARTILAGE, 2019, 27 (03) :504-512
[23]   Use of integrative epigenetic and mRNA expression analyses to identify significantly changed genes and functional pathways in osteoarthritic cartilage [J].
He, A. ;
Ning, Y. ;
Wen, Y. ;
Cai, Y. ;
Xu, K. ;
Han, J. ;
Liu, L. ;
Du, Y. ;
Liang, X. ;
Li, P. ;
Fan, Q. ;
Hao, J. ;
Wang, X. ;
Guo, X. ;
Ma, T. ;
Zhang, F. .
BONE & JOINT RESEARCH, 2018, 7 (05) :343-350
[24]   RNA sequencing reveals target genes of temporomandibular joint osteoarthritis in rats after the treatment of low-intensity pulsed ultrasound [J].
He, Dong ;
An, Yanxin ;
Li, Yanhua ;
Wang, Jing ;
Wu, Gaoyi ;
Chen, Lei ;
Zhu, Guoxiong .
GENE, 2018, 672 :126-136
[25]   Targeted proteomics of hip articular cartilage in OA and fracture patients [J].
Hosseininia, Shahrzad ;
Onnerfjord, Patrik ;
Dahlberg, Leif E. .
JOURNAL OF ORTHOPAEDIC RESEARCH, 2019, 37 (01) :131-135
[26]   Assessment of DNA Methylation Patterns in the Bone and Cartilage of a Nonhuman Primate Model of Osteoarthritis [J].
Housman, Genevieve ;
Havill, Lorena M. ;
Quillen, Ellen E. ;
Comuzzie, Anthony G. ;
Stone, Anne C. .
CARTILAGE, 2019, 10 (03) :335-345
[27]  
Hrycaj PZ, 2004, ANN RHEUM DIS, V63, P750
[28]   Elucidating the Molecular Composition of Cartilage by Proteomics [J].
Hsueh, Ming-Feng ;
Khabut, Areej ;
Kjellstrom, Sven ;
Onnefjord, Patrik ;
Kraus, Virginia Byers .
JOURNAL OF PROTEOME RESEARCH, 2016, 15 (02) :374-388
[29]   An evolutionary learning and network approach to identifying key metabolites for osteoarthritis [J].
Hu, Ting ;
Oksanen, Karoliina ;
Zhang, Weidong ;
Randell, Ed ;
Furey, Andrew ;
Sun, Guang ;
Zhai, Guangju .
PLOS COMPUTATIONAL BIOLOGY, 2018, 14 (03)
[30]  
Hu T, 2016, BIOCOMPUT-PAC SYM, P120