Identification of 315 genes essential for early zebrafish development

被引:643
作者
Amsterdam, A
Nissen, RM
Sun, ZX
Swindell, EC
Farrington, S
Hopkins, N
机构
[1] MIT, Canc Res Ctr, Cambridge, MA 02139 USA
[2] MIT, Dept Biol, Cambridge, MA 02139 USA
关键词
D O I
10.1073/pnas.0403929101
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We completed a large insertional mutagenesis screen in zebrafish to identify genes essential for embryonic and early larval development. We isolated 525 mutants, representing lesions in approximate to390 different genes, and we cloned the majority of these. Here we describe 315 mutants and the corresponding genes. Our data suggest that there are roughly 1,400 embryonic-essential genes in the fish. Thus, we have mutations in approximate to25% of these genes and have cloned approximate to22% of them. Re-screens of our collection to identify mutants with specific developmental defects suggest that approximate to50 genes are essential for the development of some individual organs or cell types. Seventy-two percent of the embryonic-essential fish genes have homologues in yeast, 93% have homologues in invertebrates (fly or worm), and 99% have homologues in human. Yeast and worm orthologues of genes that are essential for early zebrafish development have a strong tendency to be essential for viability in yeast and for embryonic development in the worm. Thus, the trait of being a genetically essential gene is conserved in evolution. This mutant collection should be a valuable resource for diverse studies of cell and developmental biology.
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页码:12792 / 12797
页数:6
相关论文
共 26 条
  • [1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    Altschul, SF
    Madden, TL
    Schaffer, AA
    Zhang, JH
    Zhang, Z
    Miller, W
    Lipman, DJ
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
  • [2] Insertional mutagenesis in zebrafish
    Amsterdam, A
    [J]. DEVELOPMENTAL DYNAMICS, 2003, 228 (03) : 523 - 534
  • [3] A large-scale insertional mutagenesis screen in zebrafish
    Amsterdam, A
    Burgess, S
    Golling, G
    Chen, WB
    Sun, ZX
    Townsend, K
    Farrington, S
    Haldi, M
    Hopkins, N
    [J]. GENES & DEVELOPMENT, 1999, 13 (20) : 2713 - 2724
  • [4] PH OF MELANOSOMES OF B-16 MURINE MELANOMA IS ACIDIC - ITS PHYSIOLOGICAL IMPORTANCE IN THE REGULATION OF MELANIN BIOSYNTHESIS
    BHATNAGAR, V
    ANJAIAH, S
    PURI, N
    DARSHANAM, BNA
    RAMAIAH, A
    [J]. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1993, 307 (01) : 183 - 192
  • [5] Chlamydomonas kinesin-II-dependent intraflagellar transport (IFT):: IFT particles contain proteins required for ciliary assembly in Caenorhabditis elegans sensory neurons
    Cole, DG
    Diener, DR
    Himelblau, AL
    Beech, PL
    Fuster, JC
    Rosenbaum, JL
    [J]. JOURNAL OF CELL BIOLOGY, 1998, 141 (04) : 993 - 1008
  • [6] Driever W, 1996, DEVELOPMENT, V123, P37
  • [7] Functional genomic analysis of C-elegans chromosome I by systematic RNA interference
    Fraser, AG
    Kamath, RS
    Zipperlen, P
    Martinez-Campos, M
    Sohrmann, M
    Ahringer, J
    [J]. NATURE, 2000, 408 (6810) : 325 - 330
  • [8] Functional profiling of the Saccharomyces cerevisiae genome
    Giaever, G
    Chu, AM
    Ni, L
    Connelly, C
    Riles, L
    Véronneau, S
    Dow, S
    Lucau-Danila, A
    Anderson, K
    André, B
    Arkin, AP
    Astromoff, A
    El Bakkoury, M
    Bangham, R
    Benito, R
    Brachat, S
    Campanaro, S
    Curtiss, M
    Davis, K
    Deutschbauer, A
    Entian, KD
    Flaherty, P
    Foury, F
    Garfinkel, DJ
    Gerstein, M
    Gotte, D
    Güldener, U
    Hegemann, JH
    Hempel, S
    Herman, Z
    Jaramillo, DF
    Kelly, DE
    Kelly, SL
    Kötter, P
    LaBonte, D
    Lamb, DC
    Lan, N
    Liang, H
    Liao, H
    Liu, L
    Luo, CY
    Lussier, M
    Mao, R
    Menard, P
    Ooi, SL
    Revuelta, JL
    Roberts, CJ
    Rose, M
    Ross-Macdonald, P
    Scherens, B
    [J]. NATURE, 2002, 418 (6896) : 387 - 391
  • [9] Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development
    Golling, G
    Amsterdam, A
    Sun, ZX
    Antonelli, M
    Maldonado, E
    Chen, WB
    Burgess, S
    Haldi, M
    Artzt, K
    Farrington, S
    Lin, SY
    Nissen, RM
    Hopkins, N
    [J]. NATURE GENETICS, 2002, 31 (02) : 135 - 140
  • [10] Haffter P, 1996, DEVELOPMENT, V123, P1