The complete chloroplast genome of Zoysia matrella (L.) Merr. isolated in Korea (Poaceae): investigation of intraspecific variations on chloroplast genomes

被引:8
作者
Lee, Bumkyu [1 ]
Park, Jongsun [2 ,3 ]
机构
[1] Jeonju Univ, Dept Environm Sci & Biotechnol Med Sci, Jeonju, South Korea
[2] InfoBoss Inc, Seoul, South Korea
[3] InfoBoss Res Ctr, Seoul, South Korea
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 02期
关键词
Zoysia matrella; Zoysiagrass; chloroplast genome; poaceae; intraspecific variations; SEQUENCE; PERFORMANCE; ALIGNMENT;
D O I
10.1080/23802359.2021.1875907
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Completed chloroplast genome of Zoysia matrella (L.) Merr. isolated in Korea is 135,888 bp long (GC ratio is 38.4%) and has four subregions: 81,370 bp of large single copy (36.3%) and 12,594 bp of small single copy (32.7%) regions are separated by 20,962 bp of inverted repeat (44.1%) regions including 130 genes (83 protein-coding genes, eight rRNAs, 38 tRNAs, and one pseudogene). 28 SNPs and 57 INDELs were identified ss intraspecific variations against previously sequenced chloroplast genome. Phylogenetic trees show that Z. matrella and Z. tenuifolia (=Z. pacifica) are clustered in one clade with low level of variations on chloroplast genomes.
引用
收藏
页码:572 / 574
页数:3
相关论文
共 26 条
  • [1] Ayres DL, 2012, SYST BIOL, V61, P170, DOI [10.1093/sysbio/syr100, 10.1093/sysbio/sys029]
  • [2] Environmental risk assessment of genetically engineered herbicide-tolerant Zoysia japonica
    Bae, T. W.
    Vanjildorj, E.
    Song, S. Y.
    Nishiguchi, S.
    Yang, S. S.
    Song, I. J.
    Chandrasekhar, T.
    Kang, T. W.
    Kim, J. I.
    Koh, Y. J.
    Lee, J.
    Lee, Y. -E.
    Ryu, K. H.
    Rui, K. Z.
    Song, P. -S.
    Lee, H. Y.
    Park, S. Y.
    [J]. JOURNAL OF ENVIRONMENTAL QUALITY, 2008, 37 (01) : 207 - 218
  • [3] Choi Joon-Soo, 2017, Weed & Turfgrass Science, V6, P306, DOI 10.5660/WTS.2017.6.4.306
  • [4] The second complete chloroplast genome sequence of the Viburnum erosum (Adoxaceae) showed a low level of intra-species variations
    Choi, Yun Gyeong
    Yun, Narae
    Park, Jongsun
    Xi, Hong
    Min, Juhyeon
    Kim, Yongsung
    Oh, Sang-Hun
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01): : 271 - 272
  • [5] GOUDSWAARD PC, 1980, BLUMEA, V26, P169
  • [6] Hilu KW, 2001, SYST BOT, V26, P386
  • [7] Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae)
    Jeon, Jae-Hyeon
    Park, Hyun-Seung
    Park, Jee Young
    Kang, Tae Sun
    Kwon, Kisung
    Kim, Yeon Bok
    Han, Jong-Won
    Kim, Seung Hyun
    Sung, Sang Hyun
    Yang, Tae-Jin
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 176 - 177
  • [8] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
    Katoh, Kazutaka
    Standley, Daron M.
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) : 772 - 780
  • [9] The comparison of the complete chloroplast genome of Suaeda japonica Makino presenting different external morphology (Amaranthaceae)
    Kim, Yongsung
    Park, Jongsun
    Chung, Youngjae
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1616 - 1618
  • [10] The complete chloroplast genome of Aconitum coreanum (H. Lev.) Rapaics (Ranunculaceae)
    Kim, Yongsung
    Yi, Jae-Sun
    Min, Juhyeon
    Xi, Hong
    Kim, Da Yeon
    Son, Janghyuk
    Park, Jongsun
    Jeon, Jeong-Ill
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3404 - 3406