Utilizing population variation, vaccination, and systems biology to study human immunology

被引:64
|
作者
Tsang, John S. [1 ,2 ]
机构
[1] NIAID, Syst Genom & Bioinformat Unit, Lab Syst Biol, Bethesda, MD 20892 USA
[2] NIH, TransNIH Ctr Human Immunol Autoimmun & Inflammat, Bethesda, MD 20892 USA
关键词
HUMAN IMMUNE-SYSTEM; SET ENRICHMENT ANALYSIS; YELLOW-FEVER VACCINE; T-CELL RESPONSES; GENE-EXPRESSION; INFLUENZA VACCINATION; GENOME-WIDE; MISSING HERITABILITY; SEASONAL INFLUENZA; ANTIBODY-RESPONSES;
D O I
10.1016/j.it.2015.06.005
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
The move toward precision medicine has highlighted the importance of understanding biological variability within and across individuals in the human population. In particular, given the prevalent involvement of the immune system in diverse pathologies, an important question is how much and what information about the state of the immune system is required to enable accurate prediction of future health and response to medical interventions. Towards addressing this question, recent studies using vaccination as a model perturbation and systems-biology approaches are beginning to provide a glimpse of how natural population variation together with multiplexed, high-throughput measurement and computational analysis can be used to uncover predictors of immune response quality in humans. Here I discuss recent developments in this emerging field, with emphasis on baseline correlates of vaccination responses, sources of immune-state variability, as well as relevant features of study design, data generation, and computational analysis.
引用
收藏
页码:479 / 493
页数:15
相关论文
共 50 条
  • [41] Population-scale proteome variation in human induced pluripotent stem cells
    Mirauta, Bogdan Andrei
    Seaton, Daniel D.
    Bensaddek, Dalila
    Brenes, Alejandro
    Bonder, Marc Jan
    Kilpinen, Helena
    Stegle, Oliver
    Lamond, Angus, I
    ELIFE, 2020, 9
  • [42] Effect of Influenza Vaccination on Mortality and Risk of Hospitalization in Elderly Individuals with and without Disabilities: A Nationwide, Population-Based Cohort Study
    Chang, Yu-Chia
    Tung, Ho-Jui
    Huang, Yu-Tung
    Lu, Chin-Te
    Ernawaty, Ernawaty
    Wu, Szu-Yuan
    VACCINES, 2020, 8 (01)
  • [43] Nutrient control of eukaryote cell growth: a systems biology study in yeast
    Gutteridge, Alex
    Pir, Pinar
    Castrillo, Juan I.
    Charles, Philip D.
    Lilley, Kathryn S.
    Oliver, Stephen G.
    BMC BIOLOGY, 2010, 8
  • [44] When the human viral infectome and diseasome networks collide: towards a systems biology platform for the aetiology of human diseases
    Navratil, Vincent
    de Chassey, Benoit
    Combe, Chantal Rabourdin
    Lotteau, Vincent
    BMC SYSTEMS BIOLOGY, 2011, 5
  • [45] Never in Neutral: A Systems Biology and Evolutionary Perspective on how Aneuploidy Contributes to Human Diseases
    Pavelka, N.
    Rancati, G.
    CYTOGENETIC AND GENOME RESEARCH, 2013, 139 (03) : 193 - 205
  • [46] Population-level variation in enhancer expression identifies disease mechanisms in the human brain
    Dong, Pengfei
    Hoffman, Gabriel E.
    Apontes, Pasha
    Bendl, Jaroslav
    Rahman, Samir
    Fernando, Michael B.
    Zeng, Biao
    Vicari, James M.
    Zhang, Wen
    Girdhar, Kiran
    Townsley, Kayla G.
    Misir, Ruth
    Brennand, Kristen J.
    Haroutunian, Vahram
    Voloudakis, Georgios
    Fullard, John F.
    Roussos, Panos
    NATURE GENETICS, 2022, 54 (10) : 1493 - +
  • [47] A clinically validated human capillary blood transcriptome test for global systems biology studies
    Toma, Ryan
    Duval, Nathan
    Pelle, Benjamin
    Parks, Matthew M.
    Gopu, Vishakh
    Torres, Pedro J.
    Camacho, Francine R.
    Shen, Nan
    Krishnan, Subha
    Hatch, Andrew
    Tily, Hal
    Perlina, Ally
    Banavar, Guruduth
    Vuyisich, Momchilo
    BIOTECHNIQUES, 2020, 69 (04) : 289 - 301
  • [48] Systems biology in unruptured intracranial aneurysm: a metabolomics study in serum for the detection of biomarkers
    Ahmed, Shiek S. S. J.
    METABOLOMICS, 2014, 10 (01) : 52 - 62
  • [49] Systems biology in unruptured intracranial aneurysm: a metabolomics study in serum for the detection of biomarkers
    Shiek S. S. J. Ahmed
    Metabolomics, 2014, 10 : 52 - 62
  • [50] A population-based study of maternal and infant factors influencing influenza vaccination among young children born in Colorado from 2008 to 2016
    Rao, Suchitra
    Alishahi, Musheng
    De Crescenzo, Lauren
    Dempsey, Amanda F.
    VACCINE, 2019, 37 (10) : 1293 - 1298