How Does Collagen Adsorb on Hydroxyapatite? Insights From Ab Initio Simulations on a Polyproline Type II Model

被引:37
作者
Cutini, Michele [1 ,2 ]
Corno, Marta [1 ,2 ,4 ]
Costa, Dominique [3 ]
Ugliengo, Piero [1 ,2 ]
机构
[1] Univ Turin, Dept Chem, Via P Giuria 7, I-10125 Turin, Italy
[2] Univ Turin, NIS Nanostruct Interfaces & Surfaces Ctr, Via P Giuria 7, I-10125 Turin, Italy
[3] PSL Univ, CNRS, Inst Rech Chim Paris, Chim ParisTech,Physicochim Surfaces, 11 Rue P&M Curie, F-75005 Paris, France
[4] Univ Piemonte Orientale, Dipartimento Sci & Innovaz Tecnol, Viale Teresa Michel 11, I-15121 Alessandria, Italy
关键词
GLYCINE ADSORPTION; SURFACES; APPROXIMATION; DYNAMICS; CRYSTAL; TISSUES; HELIX;
D O I
10.1021/acs.jpcc.7b10013
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Bone has a hierarchical structure based on the mineralized fibril, an organic matrix envisaging collagen protein in tight interaction with hydroxyapatite mineral (HAP) and stabilized by water molecules. The tremendous complexity of this natural composite material hides the extraordinary features in terms of high compressive strength and elasticity imparted by the collagen protein. Clearly, understanding the nanoscale interface and mechanics of bone at atomistic level can dramatically improve the development of biocomposite and the understanding of bone related diseases. In this work, we aim at elucidating the features of the interaction between a model of a single-collagen-strand (COL) with the most common dried P-rich (010) HAP surface. The methods of choice are static and dynamic simulations based on density functional theory at PBE-D2, PBE-D3 and B3LYP-D3 levels. Collagen is made to a large extent by proline (PRO) and derivatives, and PRO's side chain is known to affect the collagen triple helix stability dramatically. However, the role of the PRO side chain in the COL/HAP interface has never been studied so far at a quantum mechanical level. To decrease the enormous structural complexity of collagen itself, we employed a simple collagen model, i.e., a single strand based on the poly-L-proline type II polymer (PPII), which, for its composition, nicely suites our purposes. We discovered that during the HAP adsorption process, the polymer deforms to create a relatively strong electrostatic interaction between the PRO carbonyl C=O group and the most exposed Ca ion of the P-rich (010) HAP surface. Both dynamic and static simulations agree that the HAP surface guides the formation of PPII conformers, which would be unstable without the support of the HAP surface. The PROs puckering and the polymer orientation affect the PPII affinity for the HAP surface with binding energies spanning within the 63-126 kJ.mol(-1) range. This work is the first step toward the development of a full collagen model envisaging a three interlocked helical polymer interacting with the HAP surfaces.
引用
收藏
页码:7540 / 7550
页数:11
相关论文
共 57 条
[31]   Glycine Adsorption at Nonstoichiometric (010) Hydroxyapatite Surfaces: A B3LYP Study [J].
Jimenez-Izal, Elisa ;
Chiatti, Fabio ;
Corno, Marta ;
Rimola, Albert ;
Ugliengo, Piero .
JOURNAL OF PHYSICAL CHEMISTRY C, 2012, 116 (27) :14561-14567
[32]  
Kohlmeyer A., 2004, CP2K
[33]   MINERAL AND ORGANIC MATRIX INTERACTION IN NORMALLY CALCIFYING TENDON VISUALIZED IN 3 DIMENSIONS BY HIGH-VOLTAGE ELECTRON-MICROSCOPIC TOMOGRAPHY AND GRAPHIC IMAGE-RECONSTRUCTION [J].
LANDIS, WJ ;
SONG, MJ ;
LEITH, A ;
MCEWEN, L ;
MCEWEN, BF .
JOURNAL OF STRUCTURAL BIOLOGY, 1993, 110 (01) :39-54
[34]   DEVELOPMENT OF THE COLLE-SALVETTI CORRELATION-ENERGY FORMULA INTO A FUNCTIONAL OF THE ELECTRON-DENSITY [J].
LEE, CT ;
YANG, WT ;
PARR, RG .
PHYSICAL REVIEW B, 1988, 37 (02) :785-789
[35]   VESTA 3 for three-dimensional visualization of crystal, volumetric and morphology data [J].
Momma, Koichi ;
Izumi, Fujio .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2011, 44 :1272-1276
[36]  
MONKHORST HJ, 1976, PHYS REV B, V13, P5188, DOI [10.1103/PhysRevB.13.5188, 10.1103/PhysRevB.16.1746]
[37]  
Muto Y., 1943, J.Phys. Math. Soc. Jpn, V17, P629, DOI [DOI 10.11429/SUBUTSUKAISHI1927.17.10-11-12_629, 10.11429/subutsukaishi1927.17.10-11-12629, DOI 10.11429/SUBUTSUKAISHI1927.17.10-11-12629]
[38]   Molecular mechanics of mineralized collagen fibrils in bone [J].
Nair, Arun K. ;
Gautieri, Alfonso ;
Chang, Shu-Wei ;
Buehler, Markus J. .
NATURE COMMUNICATIONS, 2013, 4
[39]   A UNIFIED FORMULATION OF THE CONSTANT TEMPERATURE MOLECULAR-DYNAMICS METHODS [J].
NOSE, S .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (01) :511-519
[40]   Microfibrillar structure of type I collagen in situ [J].
Orgel, Joseph P. R. O. ;
Irving, Thomas C. ;
Miller, Andrew ;
Wess, Tim J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (24) :9001-9005