Mountain Pine Beetles Colonizing Historical and Naive Host Trees Are Associated with a Bacterial Community Highly Enriched in Genes Contributing to Terpene Metabolism

被引:202
作者
Adams, Aaron S. [1 ]
Aylward, Frank O. [2 ,3 ]
Adams, Sandye M. [1 ,2 ]
Erbilgin, Nadir [4 ]
Aukema, Brian H. [5 ]
Currie, Cameron R. [2 ,3 ]
Suen, Garret [2 ,3 ]
Raffa, Kenneth F. [1 ]
机构
[1] Univ Wisconsin, Dept Entomol, Madison, WI 53706 USA
[2] Univ Wisconsin, Dept Bacteriol, Madison, WI 53706 USA
[3] Univ Wisconsin, Dept Energy, Great Lakes Bioenergy Res Ctr, Madison, WI 53706 USA
[4] Univ Alberta, Dept Renewable Resources, Edmonton, AB, Canada
[5] Univ Minnesota, Dept Entomol, St Paul, MN USA
关键词
POLYCYCLIC AROMATIC-HYDROCARBONS; RANGE EXPANSION; GENOME ANNOTATION; CLIMATE-CHANGE; BARK BEETLES; IPS-PINI; BIODEGRADATION; SYSTEM; REPRODUCTION; DEGRADATION;
D O I
10.1128/AEM.00068-13
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The mountain pine beetle, Dendroctonus ponderosae, is a subcortical herbivore native to western North America that can kill healthy conifers by overcoming host tree defenses, which consist largely of high terpene concentrations. The mechanisms by which these beetles contend with toxic compounds are not well understood. Here, we explore a component of the hypothesis that beetle-associated bacterial symbionts contribute to the ability of D. ponderosae to overcome tree defenses by assisting with terpene detoxification. Such symbionts may facilitate host tree transitions during range expansions currently being driven by climate change. For example, this insect has recently breached the historical geophysical barrier of the Canadian Rocky Mountains, providing access to naive tree hosts and unprecedented connectivity to eastern forests. We use culture-independent techniques to describe the bacterial community associated with D. ponderosae beetles and their galleries from their historical host, Pinus contorta, and their more recent host, hybrid P. contorta-Pinus banksiana. We show that these communities are enriched with genes involved in terpene degradation compared with other plant biomass-processing microbial communities. These pine beetle microbial communities are dominated by members of the genera Pseudomonas, Rahnella, Serratia, and Burkholderia, and the majority of genes involved in terpene degradation belong to these genera. Our work provides the first metagenome of bacterial communities associated with a bark beetle and is consistent with a potential microbial contribution to detoxification of tree defenses needed to survive the subcortical environment.
引用
收藏
页码:3468 / 3475
页数:8
相关论文
共 55 条
[31]   Genome sequencing in microfabricated high-density picolitre reactors [J].
Margulies, M ;
Egholm, M ;
Altman, WE ;
Attiya, S ;
Bader, JS ;
Bemben, LA ;
Berka, J ;
Braverman, MS ;
Chen, YJ ;
Chen, ZT ;
Dewell, SB ;
Du, L ;
Fierro, JM ;
Gomes, XV ;
Godwin, BC ;
He, W ;
Helgesen, S ;
Ho, CH ;
Irzyk, GP ;
Jando, SC ;
Alenquer, MLI ;
Jarvie, TP ;
Jirage, KB ;
Kim, JB ;
Knight, JR ;
Lanza, JR ;
Leamon, JH ;
Lefkowitz, SM ;
Lei, M ;
Li, J ;
Lohman, KL ;
Lu, H ;
Makhijani, VB ;
McDade, KE ;
McKenna, MP ;
Myers, EW ;
Nickerson, E ;
Nobile, JR ;
Plant, R ;
Puc, BP ;
Ronan, MT ;
Roth, GT ;
Sarkis, GJ ;
Simons, JF ;
Simpson, JW ;
Srinivasan, M ;
Tartaro, KR ;
Tomasz, A ;
Vogt, KA ;
Volkmer, GA .
NATURE, 2005, 437 (7057) :376-380
[32]   IMG/M: a data management and analysis system for metagenomes [J].
Markowitz, Victor M. ;
Ivanova, Natalia N. ;
Szeto, Ernest ;
Palaniappan, Krishna ;
Chu, Ken ;
Dalevi, Daniel ;
Chen, I-Min A. ;
Grechkin, Yuri ;
Dubchak, Inna ;
Anderson, Iain ;
Lykidis, Athanasios ;
Mavromatis, Konstantinos ;
Hugenholtz, Philip ;
Kyrpides, Nikos C. .
NUCLEIC ACIDS RESEARCH, 2008, 36 :D534-D538
[33]   IMG ER: a system for microbial genome annotation expert review and curation [J].
Markowitz, Victor M. ;
Mavromatis, Konstantinos ;
Ivanova, Natalia N. ;
Chen, I-Min A. ;
Chu, Ken ;
Kyrpides, Nikos C. .
BIOINFORMATICS, 2009, 25 (17) :2271-2278
[34]   Recent advances in understanding resin acid biodegradation: microbial diversity and metabolism [J].
Martin, VJJ ;
Yu, ZT ;
Mohn, WW .
ARCHIVES OF MICROBIOLOGY, 1999, 172 (03) :131-138
[35]   Physiological and phylogenetic diversity of bacteria growing on resin acids [J].
Mohn, WW ;
Wilson, AE ;
Bicho, P ;
Moore, ERB .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 1999, 22 (01) :68-78
[36]   Bacterial Community and Nitrogen Fixation in the Red Turpentine Beetle, Dendroctonus valens LeConte (Coleoptera: Curculionidae: Scolytinae) [J].
Morales-Jimenez, Jesus ;
Zuniga, Gerardo ;
Villa-Tanaca, Lourdes ;
Hernandez-Rodriguez, Cesar .
MICROBIAL ECOLOGY, 2009, 58 (04) :879-891
[37]   Symbiosis [J].
Moran, Nancy A. .
CURRENT BIOLOGY, 2006, 16 (20) :R866-R871
[38]   KAAS: an automatic genome annotation and pathway reconstruction server [J].
Moriya, Yuki ;
Itoh, Masumi ;
Okuda, Shujiro ;
Yoshizawa, Akiyasu C. ;
Kanehisa, Minoru .
NUCLEIC ACIDS RESEARCH, 2007, 35 :W182-W185
[39]   Interactions among scolytid bark beetles, their associated fungi, and live host conifers [J].
Paine, TD ;
Raffa, KF ;
Harrington, TC .
ANNUAL REVIEW OF ENTOMOLOGY, 1997, 42 :179-206
[40]   Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores [J].
Pope, P. B. ;
Denman, S. E. ;
Jones, M. ;
Tringe, S. G. ;
Barry, K. ;
Malfatti, S. A. ;
McHardy, A. C. ;
Cheng, J. -F. ;
Hugenholtz, P. ;
McSweeney, C. S. ;
Morrison, M. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (33) :14793-14798