EMPOP-A forensic mtDNA database

被引:302
作者
Parson, Walther [1 ]
Duer, Arne [2 ]
机构
[1] Innsbruck Med Univ, Inst Legal Med, A-6020 Innsbruck, Austria
[2] Univ Innsbruck, Inst Math, A-6020 Innsbruck, Austria
关键词
Mitochondrial DNA sequencing; mtDNA population databases; Network analysis; Quality control; Phantom mutations;
D O I
10.1016/j.fsigen.2007.01.018
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Mitochondrial DNA databases stand as the basis for frequency estimations of mtDNA sequences that became relevant in a case. The establishment of mtDNA databases sounds trivial; however, it has been shown in the past that this undertaking is prone to error for several reasons, particularly human error. We have established a concept for mtDNA data generation, analysis, transfer and quality control that meets forensic standards. Due to the complexity of mtDNA population data tables it is often difficult if not impossible to detect errors, especially for the untrained eye. We developed software based on quasi-median network analysis that visualizes mtDNA data tables and thus signposts sequencing, interpretation and transcription errors. The mtDNA data (N = 5173; release 1) are stored and made publicly available via the Internet in the form of the EDNAP mtDNA Population Database, short EMPOP This website also facilitates quasi-median network analysis and provides results that can be used to check the quality of mtDNA sequence data. EMPOP has been launched on 16 October 2006 and is since then available at http:// www.empop.org. (c) 2007 Elsevier Ireland Ltd. All rights reserved.
引用
收藏
页码:88 / 92
页数:5
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