Genome Analysis of "Candidatus Regiella insecticola" Strain TUt, Facultative Bacterial Symbiont of the Pea Aphid Acyrthosiphon pisum

被引:2
作者
Nikoh, Naruo [1 ]
Tsuchida, Tsutomu [2 ,3 ]
Koga, Ryuichi [2 ]
Oshima, Kenshiro [4 ]
Hattori, Masahira [4 ]
Fukatsu, Takema [2 ,5 ,6 ]
机构
[1] Open Univ Japan, Dept Liberal Arts, Chiba, Japan
[2] Natl Inst Adv Ind Sci & Technol, Bioprod Res Inst, Tsukuba, Ibaraki, Japan
[3] Univ Toyama, Acad Assembly, Fac Sci, Toyama, Japan
[4] Univ Tokyo, Ctr Omics & Bioinformat, Grad Sch Frontier Sci, Kashiwa, Chiba, Japan
[5] Univ Tokyo, Grad Sch Sci, Dept Biol Sci, Tokyo, Japan
[6] Univ Tsukuba, Grad Sch Life & Environm Sci, Tsukuba, Ibaraki, Japan
关键词
POPULATIONS; PROTECTION; DIVERSITY; EVOLUTION; PATHOGEN;
D O I
10.1128/MRA.00598-20
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The genome of "Candidatus Regiella insecticola" strain TUt, a facultative bacterial symbiont of the pea aphid Acyrthosiphon pisum, was analyzed. We determined a 2.5-Mb draft genome consisting of 14 contigs; this will contribute to the understanding of the symbiont, which underpins various ecologically adaptive traits of the host insect.
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页数:2
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共 22 条
[1]   UniProt: the universal protein knowledgebase [J].
Bateman, Alex ;
Martin, Maria Jesus ;
O'Donovan, Claire ;
Magrane, Michele ;
Alpi, Emanuele ;
Antunes, Ricardo ;
Bely, Benoit ;
Bingley, Mark ;
Bonilla, Carlos ;
Britto, Ramona ;
Bursteinas, Borisas ;
Bye-A-Jee, Hema ;
Cowley, Andrew ;
Da Silva, Alan ;
De Giorgi, Maurizio ;
Dogan, Tunca ;
Fazzini, Francesco ;
Castro, Leyla Garcia ;
Figueira, Luis ;
Garmiri, Penelope ;
Georghiou, George ;
Gonzalez, Daniel ;
Hatton-Ellis, Emma ;
Li, Weizhong ;
Liu, Wudong ;
Lopez, Rodrigo ;
Luo, Jie ;
Lussi, Yvonne ;
MacDougall, Alistair ;
Nightingale, Andrew ;
Palka, Barbara ;
Pichler, Klemens ;
Poggioli, Diego ;
Pundir, Sangya ;
Pureza, Luis ;
Qi, Guoying ;
Rosanoff, Steven ;
Saidi, Rabie ;
Sawford, Tony ;
Shypitsyna, Aleksandra ;
Speretta, Elena ;
Turner, Edward ;
Tyagi, Nidhi ;
Volynkin, Vladimir ;
Wardell, Tony ;
Warner, Kate ;
Watkins, Xavier ;
Zaru, Rossana ;
Zellner, Hermann ;
Xenarios, Ioannis .
NUCLEIC ACIDS RESEARCH, 2017, 45 (D1) :D158-D169
[2]   Dynamics of genome evolution in facultative symbionts of aphids [J].
Degnan, Patrick H. ;
Leonardo, Teresa E. ;
Cass, Bodil N. ;
Hurwitz, Bonnie ;
Stern, David ;
Gibbs, Richard A. ;
Richards, Stephen ;
Moran, Nancy A. .
ENVIRONMENTAL MICROBIOLOGY, 2010, 12 (08) :2060-2069
[3]   Improved microbial gene identification with GLIMMER [J].
Delcher, AL ;
Harmon, D ;
Kasif, S ;
White, O ;
Salzberg, SL .
NUCLEIC ACIDS RESEARCH, 1999, 27 (23) :4636-4641
[4]   Genetic variation in the effect of a facultative symbiont on host-plant use by pea aphids [J].
Ferrari, Julia ;
Scarborough, Claire L. ;
Godfray, H. Charles J. .
OECOLOGIA, 2007, 153 (02) :323-329
[5]   Automated finishing with Autofinish [J].
Gordon, D ;
Desmarais, C ;
Green, P .
GENOME RESEARCH, 2001, 11 (04) :614-625
[6]   Genomic basis of endosymbiont-conferred protection against an insect parasitoid [J].
Hansen, Allison K. ;
Vorburger, Christoph ;
Moran, Nancy A. .
GENOME RESEARCH, 2012, 22 (01) :106-114
[7]   Diversity of bacteria associated with natural aphid populations [J].
Haynes, S ;
Darby, AC ;
Daniell, TJ ;
Webster, G ;
van Veen, FJF ;
Godfray, HCJ ;
Prosser, JI ;
Douglas, AE .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (12) :7216-7223
[8]   Evolutionary relationships of three new species of Enterobacteriaceae living as symbionts of aphids and other insects [J].
Moran, NA ;
Russell, JA ;
Koga, R ;
Fukatsu, T .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71 (06) :3302-3310
[9]  
Nikoh N, 2019, MICROBIOL RESOUR ANN, V8, DOI [10.1128/MRA.00272-19, 10.1128/mra.00272-19]
[10]   Reductive Evolution of Bacterial Genome in Insect Gut Environment [J].
Nikoh, Naruo ;
Hosokawa, Takahiro ;
Oshima, Kenshiro ;
Hattori, Masahira ;
Fukatsu, Takema .
GENOME BIOLOGY AND EVOLUTION, 2011, 3 :702-714