A genome-wide association study indicates LCORL/NCAPG as a candidate locus for withers height in German Warmblood horses

被引:105
作者
Tetens, J. [1 ]
Widmann, P. [2 ]
Kuehn, C. [2 ]
Thaller, G. [1 ]
机构
[1] Univ Kiel, Inst Anim Breeding & Husb, D-24118 Kiel, Germany
[2] Leibniz Inst Farm Anim Biol, Res Unit Mol Biol, D-18196 Dummerstorf, Germany
关键词
GWAS; QTL; horse; withers height; growth; SIZE; SEQUENCE; GENETICS; COMPLEX; TRAITS; GROWTH;
D O I
10.1111/age.12031
中图分类号
S8 [畜牧、 动物医学、狩猎、蚕、蜂];
学科分类号
0905 ;
摘要
A genome-wide association scan for loci affecting withers height was conducted in 782 German Warmblood stallions, which were genotyped using the Illumina EquineSNP50 Bead Chip. A principal components approach was applied to correct for population structure. The analysis revealed a single major QTL on ECA3 explaining similar to 18 per cent of the phenotypic variance, which is in concordance with recent reports from other horse populations. The LCORL/NCAPG locus represents a strong candidate gene for this QTL. This locus is among a small number that have consistently been identified to influence human height in several large meta-analyses. Furthermore, a mutation within the NCAPG gene was found to affect growth and body frame size in cattle. Together with the results of this study in German Warmbloods, these findings strongly indicate LCORL/NCAPG as a candidate locus for withers height in horses. Further studies are, however, needed to confirm this.
引用
收藏
页码:467 / 471
页数:5
相关论文
共 22 条
[11]   Polymorphic Regions Affecting Human Height Also Control Stature in Cattle [J].
Pryce, Jennie E. ;
Hayes, Ben J. ;
Bolormaa, Sunduimijid ;
Goddard, Michael E. .
GENETICS, 2011, 187 (03) :981-984
[12]   The SNP c.1326T>G in the non-SMC condensin I complex, subunit G (NCAPG) gene encoding a p.Ile442Met variant is associated with an increase in body frame size at puberty in cattle [J].
Setoguchi, K. ;
Watanabe, T. ;
Weikard, R. ;
Albrecht, E. ;
Kuehn, C. ;
Kinoshita, A. ;
Sugimoto, Y. ;
Takasuga, A. .
ANIMAL GENETICS, 2011, 42 (06) :650-655
[13]   Cross-breed comparisons identified a critical 591-kb region for bovine carcass weight QTL (CW-2) on chromosome 6 and the Ile-442-Met substitution in NCAPG as a positional candidate [J].
Setoguchi, Kouji ;
Furuta, Masako ;
Hirano, Takashi ;
Nagao, Tomoko ;
Watanabe, Toshio ;
Sugimoto, Yoshikazu ;
Takasuga, Akiko .
BMC GENETICS, 2009, 10
[14]   A Genome-Wide Association Study Reveals Loci Influencing Height and Other Conformation Traits in Horses [J].
Signer-Hasler, Heidi ;
Flury, Christine ;
Haase, Bianca ;
Burger, Dominik ;
Simianer, Henner ;
Leeb, Tosso ;
Rieder, Stefan .
PLOS ONE, 2012, 7 (05)
[15]   Meta-Analysis of Genome-Wide Scans for Human Adult Stature Identifies Novel Loci and Associations with Measures of Skeletal Frame Size [J].
Soranzo, Nicole ;
Rivadeneira, Fernando ;
Chinappen-Horsley, Usha ;
Malkina, Ida ;
Richards, J. Brent ;
Hammond, Naomi ;
Stolk, Lisette ;
Nica, Alexandra ;
Inouye, Michael ;
Hofman, Albert ;
Stephens, Jonathan ;
Wheeler, Eleanor ;
Arp, Pascal ;
Gwilliam, Rhian ;
Jhamai, P. Mila ;
Potter, Simon ;
Chaney, Amy ;
Ghori, Mohammed J. R. ;
Ravindrarajah, Radhi ;
Ermakov, Sergey ;
Estrada, Karol ;
Pols, Huibert A. P. ;
Williams, Frances M. ;
McArdle, Wendy L. ;
van Meurs, Joyce B. ;
Loos, Ruth J. F. ;
Dermitzakis, Emmanouil T. ;
Ahmadi, Kourosh R. ;
Hart, Deborah J. ;
Ouwehand, Willem H. ;
Wareham, Nicholas J. ;
Barroso, Ines ;
Sandhu, Manjinder S. ;
Strachan, David P. ;
Livshits, Gregory ;
Spector, Timothy D. ;
Uitterlinden, Andre G. ;
Deloukas, Panos .
PLOS GENETICS, 2009, 5 (04)
[16]   A single IGF1 allele is a major determinant of small size in dogs [J].
Sutter, Nathan B. ;
Bustamante, Carlos D. ;
Chase, Kevin ;
Gray, Melissa M. ;
Zhao, Keyan ;
Zhu, Lan ;
Padhukasahasram, Badri ;
Karlins, Eric ;
Davis, Sean ;
Jones, Paul G. ;
Quignon, Pascale ;
Johnson, Gary S. ;
Parker, Heidi G. ;
Fretwell, Neale ;
Mosher, Dana S. ;
Lawler, Dennis F. ;
Satyaraj, Ebenezer ;
Nordborg, Magnus ;
Lark, K. Gordon ;
Wayne, Robert K. ;
Ostrander, Elaine A. .
SCIENCE, 2007, 316 (5821) :112-115
[17]   From Galton to GWAS: quantitative genetics of human height [J].
Visscher, Peter M. ;
McEvoy, Brian ;
Yang, Jian .
GENETICS RESEARCH, 2010, 92 (5-6) :371-379
[18]   Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse [J].
Wade, C. M. ;
Giulotto, E. ;
Sigurdsson, S. ;
Zoli, M. ;
Gnerre, S. ;
Imsland, F. ;
Lear, T. L. ;
Adelson, D. L. ;
Bailey, E. ;
Bellone, R. R. ;
Bloecker, H. ;
Distl, O. ;
Edgar, R. C. ;
Garber, M. ;
Leeb, T. ;
Mauceli, E. ;
MacLeod, J. N. ;
Penedo, M. C. T. ;
Raison, J. M. ;
Sharpe, T. ;
Vogel, J. ;
Andersson, L. ;
Antczak, D. F. ;
Biagi, T. ;
Binns, M. M. ;
Chowdhary, B. P. ;
Coleman, S. J. ;
Della Valle, G. ;
Fryc, S. ;
Guerin, G. ;
Hasegawa, T. ;
Hill, E. W. ;
Jurka, J. ;
Kiialainen, A. ;
Lindgren, G. ;
Liu, J. ;
Magnani, E. ;
Mickelson, J. R. ;
Murray, J. ;
Nergadze, S. G. ;
Onofrio, R. ;
Pedroni, S. ;
Piras, M. F. ;
Raudsepp, T. ;
Rocchi, M. ;
Roed, K. H. ;
Ryder, O. A. ;
Searle, S. ;
Skow, L. ;
Swinburne, J. E. .
SCIENCE, 2009, 326 (5954) :865-867
[19]   Genome-wide association analysis identifies 20 loci that influence adult height [J].
Weedon, Michael N. ;
Lango, Hana ;
Lindgren, Cecilia M. ;
Wallace, Chris ;
Evans, David M. ;
Mangino, Massimo ;
Freathy, Rachel M. ;
Perry, John R. B. ;
Stevens, Suzanne ;
Hall, Alistair S. ;
Samani, Nilesh J. ;
Shields, Beverly ;
Prokopenko, Inga ;
Farrall, Martin ;
Dominiczak, Anna ;
Johnson, Toby ;
Bergmann, Sven ;
Beckmann, Jacques S. ;
Vollenweider, Peter ;
Waterworth, Dawn M. ;
Mooser, Vincent ;
Palmer, Colin N. A. ;
Morris, Andrew D. ;
Ouwehand, Willem H. ;
Caulfield, Mark ;
Munroe, Patricia B. ;
Hattersley, Andrew T. ;
McCarthy, Mark I. ;
Frayling, Timothy M. .
NATURE GENETICS, 2008, 40 (05) :575-583
[20]   Metabolomic profiles indicate distinct physiological pathways affected by two loci with major divergent effect on Bos taurus growth and lipid deposition [J].
Weikard, Rosemarie ;
Altmaier, Elisabeth ;
Suhre, Karsten ;
Weinberger, Klaus M. ;
Hammon, Harald M. ;
Albrecht, Elke ;
Setoguchi, Kouji ;
Takasuga, Akiko ;
Kuehn, Christa .
PHYSIOLOGICAL GENOMICS, 2010, 42A (02) :79-88