Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1

被引：31

作者：

Anderson, Iain J. ^{[1
]}

Sieprawska-Lupa, Magdalena ^{[2
]}

Lapidus, Alla ^{[1
]}

Nolan, Matt ^{[1
]}

Copeland, Alex ^{[1
]}

Del Rio, Tijana Glavina ^{[1
]}

Tice, Hope ^{[1
]}

Dalin, Eileen ^{[1
]}

Barry, Kerrie ^{[1
]}

Saunders, Elizabeth ^{[1
,3
]}

Han, Cliff ^{[1
,3
]}

Brettin, Thomas ^{[1
,3
]}

Detter, John C. ^{[1
,3
]}

Bruce, David ^{[1
,3
]}

Mikhailova, Natalia ^{[1
]}

Pitluck, Sam ^{[1
]}

Hauser, Loren ^{[1
,4
]}

Land, Miriam ^{[1
,4
]}

Lucas, Susan ^{[1
]}

Richardson, Paul ^{[1
]}

Whitman, William B. ^{[2
]}

Kyrpides, Nikos C. ^{[1
]}

机构：

[1] Joint Genome Inst, Walnut Creek, CA 94598 USA

[2] Univ Georgia, Dept Microbiol, Athens, GA 30602 USA

[3] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA

[4] Oak Ridge Natl Lab, Oak Ridge, TN USA

来源：

STANDARDS IN GENOMIC SCIENCES | 2009年 / 1卷 / 02期

关键词：

Archaea; methanogen; Methanomicrobiales; METHANOGENIUM-MARISNIGRI; DATABASE; TOOL; IDENTIFICATION; ANNOTATION; BACTERIA; ARCHAEA; SYSTEM; GENUS; NOV;

D O I：

10.4056/sigs.32535

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Methanoculleus marisnigri Romesser et al. 1981 is a methanogen belonging to the order Methanomicrobiales within the archaeal phylum Euryarchaeota. The type strain, JR1, was isolated from anoxic sediments of the Black Sea. M. marisnigri is of phylogenetic interest because at the time the sequencing project began only one genome had previously been sequenced from the order Methanomicrobiales. We report here the complete genome sequence of M. marisnigri type strain JR1 and its annotation. This is part of a Joint Genome Institute 2006 Community Sequencing Program to sequence genomes of diverse Archaea.

引用

页码：189 / 196

页数：8

共 34 条

[1] Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens [J].

Anderson, Iain ;

Ulrich, Luke E. ;

Lupa, Boguslaw ;

Susanti, Dwi ;

Porat, Iris ;

Hooper, Sean D. ;

Lykidis, Athanasios ;

Sieprawska-Lupa, Magdalena ;

Dharmarajan, Lakshmi ;

Goltsman, Eugene ;

Lapidus, Alla ;

Saunders, Elizabeth ;

Han, Cliff ;

Land, Miriam ;

Lucas, Susan ;

Mukhopadhyay, Biswarup ;

Whitman, William B. ;

Woese, Carl ;

Bristow, James ;

Kyrpides, Nikos .

PLOS ONE, 2009, 4 (06)

[2]

[Anonymous], INT J SYST BACTERIOL

[3] Gene Ontology: tool for the unification of biology [J].

Ashburner, M ;

Ball, CA ;

Blake, JA ;

Botstein, D ;

Butler, H ;

Cherry, JM ;

Davis, AP ;

Dolinski, K ;

Dwight, SS ;

Eppig, JT ;

Harris, MA ;

Hill, DP ;

Issel-Tarver, L ;

Kasarskis, A ;

Lewis, S ;

Matese, JC ;

Richardson, JE ;

Ringwald, M ;

Rubin, GM ;

Sherlock, G .

NATURE GENETICS, 2000, 25 (01) :25-29

[4] CRITICA: Coding region identification tool invoking comparative analysis [J].

Badger, JH ;

Olsen, GJ .

MOLECULAR BIOLOGY AND EVOLUTION, 1999, 16 (04) :512-524

[5] The Universal Protein Resource (UniProt) 2009 [J].

Bairoch, Amos ;

Consortium, UniProt ;

Bougueleret, Lydie ;

Altairac, Severine ;

Amendolia, Valeria ;

Auchincloss, Andrea ;

Argoud-Puy, Ghislaine ;

Axelsen, Kristian ;

Baratin, Delphine ;

Blatter, Marie-Claude ;

Boeckmann, Brigitte ;

Bolleman, Jerven ;

Bollondi, Laurent ;

Boutet, Emmanuel ;

Quintaje, Silvia Braconi ;

Breuza, Lionel ;

Bridge, Alan ;

deCastro, Edouard ;

Ciapina, Luciane ;

Coral, Danielle ;

Coudert, Elisabeth ;

Cusin, Isabelle ;

Delbard, Gwennaelle ;

Dornevil, Dolnide ;

Roggli, Paula Duek ;

Duvaud, Severine ;

Estreicher, Anne ;

Famiglietti, Livia ;

Feuermann, Marc ;

Gehant, Sebastian ;

Farriol-Mathis, Nathalie ;

Ferro, Serenella ;

Gasteiger, Elisabeth ;

Gateau, Alain ;

Gerritsen, Vivienne ;

Gos, Arnaud ;

Gruaz-Gumowski, Nadine ;

Hinz, Ursula ;

Hulo, Chantal ;

Hulo, Nicolas ;

James, Janet ;

Jimenez, Silvia ;

Jungo, Florence ;

Junker, Vivien ;

Kappler, Thomas ;

Keller, Guillaume ;

Lachaize, Corinne ;

Lane-Guermonprez, Lydie ;

Langendijk-Genevaux, Petra ;

Lara, Vicente .

NUCLEIC ACIDS RESEARCH, 2009, 37 :D169-D174

[6] METHANOGENS - RE-EVALUATION OF A UNIQUE BIOLOGICAL GROUP [J].

BALCH, WE ;

FOX, GE ;

MAGRUM, LJ ;

WOESE, CR ;

WOLFE, RS .

MICROBIOLOGICAL REVIEWS, 1979, 43 (02) :260-296

[7]

Bapteste Eric, 2005, Archaea, V1, P353, DOI 10.1155/2005/859728

[8] CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats [J].

Bland, Charles ;

Ramsey, Teresa L. ;

Sabree, Fareedah ;

Lowe, Micheal ;

Brown, Kyndall ;

Kyrpides, Nikos C. ;

Hugenholtz, Philip .

BMC BIOINFORMATICS, 2007, 8 (1)

[9] Enzyme-specific profiles for genome annotation: PRIAM [J].

Claudel-Renard, C ;

Chevalet, C ;

Faraut, T ;

Kahn, D .

NUCLEIC ACIDS RESEARCH, 2003, 31 (22) :6633-6639

[10] The Ribosomal Database Project: improved alignments and new tools for rRNA analysis [J].

Cole, J. R. ;

Wang, Q. ;

Cardenas, E. ;

Fish, J. ;

Chai, B. ;

Farris, R. J. ;

Kulam-Syed-Mohideen, A. S. ;

McGarrell, D. M. ;

Marsh, T. ;

Garrity, G. M. ;

Tiedje, J. M. .

NUCLEIC ACIDS RESEARCH, 2009, 37 :D141-D145

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