Role of protein-water hydrogen bond dynamics in the protein dynamical transition

被引:321
|
作者
Tarek, M [1 ]
Tobias, DJ
机构
[1] Natl Inst Stand & Technol, Ctr Neutron Res, Gaithersburg, MD 20899 USA
[2] Univ Penn, Dept Chem, Philadelphia, PA 19103 USA
[3] Univ Calif Irvine, Dept Chem, Irvine, CA 92697 USA
[4] Univ Calif Irvine, Inst Surface & Interface Sci, Irvine, CA 92697 USA
关键词
D O I
10.1103/PhysRevLett.88.138101
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
The role of water in protein dynamics has been investigated using molecular dynamics simulations of crystals and a dehydrated powder. On the 100 ps time scale, the anharmonic and diffusive motions involved in the protein structural relaxation are correlated with the protein-water hydrogen bond dynamics. The complete structural relaxation of the protein requires relaxation of the hydrogen bond network via solvent translational displacement. Inhibiting the solvent translational mobility, and therefore the protein-water hydrogen bond dynamics, has an effect on the protein relaxation similar to dehydration.
引用
收藏
页数:4
相关论文
共 50 条
  • [1] Spatial Dependence of Protein-Water Collective Hydrogen-Bond Dynamics
    Heyden, Matthias
    Tobias, Douglas J.
    PHYSICAL REVIEW LETTERS, 2013, 111 (21)
  • [2] Electrostatics of the protein-water interface and the dynamical transition in proteins
    Matyushov, Dmitry V.
    Morozov, Alexander Y.
    PHYSICAL REVIEW E, 2011, 84 (01):
  • [3] Configurational Disorder of Water Hydrogen-Bond Network at the Protein Dynamical Transition
    Rahaman, Obaidur
    Kalimeri, Maria
    Katava, Marina
    Paciaroni, Alessandro
    Sterpone, Fabio
    JOURNAL OF PHYSICAL CHEMISTRY B, 2017, 121 (28): : 6792 - 6798
  • [4] The Role of Dynamical Transition in Protein Function: Coupling of Protein Collective Vibrations and Water Dynamics
    Xu, Mengyang
    Niessen, Katherine
    Deng, Yanting
    Michki, Nigel
    Snell, Edward
    Markelz, Andrea
    PROTEIN SCIENCE, 2016, 25 : 87 - 88
  • [5] Structure and dynamics of protein-water interfaces
    Doster, W
    Gebhard, R
    Soper, A
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2004, 228 : U224 - U224
  • [6] Protein-water dynamics in antifreeze protein III activity
    Xu, Yao
    Baeumer, Alexander
    Meister, Konrad
    Bischak, Connor G.
    DeVries, Arthur L.
    Leitner, David M.
    Havenith, Martina
    CHEMICAL PHYSICS LETTERS, 2016, 647 : 1 - 6
  • [7] The role of protein–solvent hydrogen bond dynamics in the structural relaxation of a protein in glycerol versus water
    Mounir Tarek
    Douglas J. Tobias
    European Biophysics Journal, 2008, 37
  • [8] Heterogeneity of water structure and dynamics at the protein-water interface
    Heyden, Matthias
    JOURNAL OF CHEMICAL PHYSICS, 2019, 150 (09):
  • [9] Prody's latest advancements: Gaining insights into protein-protein and protein-water interactions, and their role in protein dynamics
    Mikulska-Ruminska, Karolina
    Doljanin, Frane
    Krieger, James M.
    Cao, Xin
    Wu, Gary
    Banerjee, Anupam
    Simmerling, Carlos
    Coutsias, Evangelos A.
    Bahar, Ivet
    BIOPHYSICAL JOURNAL, 2024, 123 (03) : 462A - 462A
  • [10] Surface hydration dynamics and protein-water interactions
    Zhong, Dongping
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2007, 233