Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812T)

被引：11

作者：

Anderson, Iain ^{[2
]}

Saunders, Elizabeth ^{[2
,3
]}

Lapidus, Alla ^{[2
]}

Nolan, Matt ^{[2
]}

Lucas, Susan ^{[2
]}

Tice, Hope ^{[2
]}

Del Rio, Tijana Glavina ^{[2
]}

Cheng, Jan-Fang ^{[2
]}

Han, Cliff ^{[2
,3
]}

Tapia, Roxanne ^{[2
,3
]}

Goodwin, Lynne A. ^{[2
,3
]}

Pitluck, Sam ^{[2
]}

Liolios, Konstantinos ^{[2
]}

Mavromatis, Konstantinos ^{[2
]}

Pagani, Ioanna ^{[2
]}

Ivanova, Natalia ^{[2
]}

Mikhailova, Natalia ^{[2
]}

Pati, Amrita ^{[2
]}

Chen, Amy ^{[4
]}

Palaniappan, Krishna ^{[4
]}

Land, Miriam ^{[2
,5
]}

Hauser, Loren ^{[2
,5
]}

Jeffries, Cynthia D. ^{[2
,5
]}

Chang, Yun-juan ^{[2
,5
]}

Brambilla, Evelyne-Marie ^{[1
]}

Rohde, Manfred ^{[6
]}

Spring, Stefan ^{[1
]}

Goeker, Markus ^{[1
]}

Detter, John C. ^{[2
,3
]}

Woyke, Tanja ^{[2
]}

Bristow, James ^{[2
]}

Eisen, Jonathan A. ^{[2
,7
]}

Markowitz, Victor ^{[4
]}

Hugenholtz, Philip ^{[2
,8
]}

Kyrpides, Nikos C. ^{[2
]}

Klenk, Hans-Peter ^{[1
]}

机构：

[1] Leibniz Inst DSMZ German Collect Microorganisms &, Braunschweig, Germany

[2] DOE Joint Genome Inst, Walnut Creek, CA USA

[3] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA

[4] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA

[5] Oak Ridge Natl Lab, Oak Ridge, TN USA

[6] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany

[7] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA

[8] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia

来源：

STANDARDS IN GENOMIC SCIENCES | 2012年 / 6卷 / 02期

关键词：

strictly anaerobic; motile; Gram-negative; thermophilic; sulfate-reducing; chemolithoautotrophic; black smoker; Thermodesulfobacteria; Thermodesulfobacteriaceae; GEBA; RNA GENES; DATABASE; ARCHAEA; PREDICTION; ALGORITHM; GRAPHS; TOOL;

D O I：

10.4056/sigs.2665915

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Thermodesulfatator indicus Moussard et al. 2004 is a member of the Thermodesulfobacteriaceae, a family in the phylum Thermodesulfobacteria that is currently poorly characterized at the genome level. Members of this phylum are of interest because they represent a distinct, deep-branching, Gram-negative lineage. T. indicus is an anaerobic, thermophilic, chemolithoautotrophic sulfate reducer isolated from a deep-sea hydrothermal vent. Here we describe the features of this organism, together with the complete genome sequence, and annotation. The 2,322,224 bp long chromosome with its 2,233 protein-coding and 58 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

引用

页码：155 / 164

页数：10

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