Radiologic image-based statistical shape analysis of brain tumours

被引:19
作者
Bharath, Karthik [1 ]
Kurtek, Sebastian [2 ]
Rao, Arvind [3 ]
Baladandayuthapani, Veerabhadran [3 ]
机构
[1] Univ Nottingham, Nottingham, England
[2] Ohio State Univ, Columbus, OH 43210 USA
[3] Univ Texas MD Anderson Canc Ctr, Houston, TX 77030 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
Clustering; Glioblastoma multiforme; Magnetic resonance imaging; Shape manifold; Survival analysis; GLIOBLASTOMA; SURVIVAL; MODELS; HETEROGENEITY;
D O I
10.1111/rssc.12272
中图分类号
O21 [概率论与数理统计]; C8 [统计学];
学科分类号
020208 ; 070103 ; 0714 ;
摘要
We propose a curve-based Riemannian geometric approach for general shape-based statistical analyses of tumours obtained from radiologic images. A key component of the framework is a suitable metric that enables comparisons of tumour shapes, provides tools for computing descriptive statistics and implementing principal component analysis on the space of tumour shapes and allows for a rich class of continuous deformations of a tumour shape. The utility of the framework is illustrated through specific statistical tasks on a data set of radiologic images of patients diagnosed with glioblastoma multiforme, a malignant brain tumour with poor prognosis. In particular, our analysis discovers two patient clusters with very different survival, subtype and genomic characteristics. Furthermore, it is demonstrated that adding tumour shape information to survival models containing clinical and genomic variables results in a significant increase in predictive power.
引用
收藏
页码:1357 / 1378
页数:22
相关论文
共 47 条
[1]   Overall Survival of Newly Diagnosed Glioblastoma Patients Receiving Carmustine Wafers Followed by Radiation and Concurrent Temozolomide Plus Rotational Multiagent Chemotherapy [J].
Affronti, Mary Lou ;
Heery, Christopher R. ;
Herndon, James E., II ;
Rich, Jeremy N. ;
Reardon, David A. ;
Desjardins, Annick ;
Vredenburgh, James J. ;
Friedman, Allan H. ;
Bigner, Darell D. ;
Friedman, Henry S. .
CANCER, 2009, 115 (15) :3501-3511
[2]   Overview of the Geometries of Shape Spaces and Diffeomorphism Groups [J].
Bauer, Martin ;
Bruveris, Martins ;
Michor, Peter W. .
JOURNAL OF MATHEMATICAL IMAGING AND VISION, 2014, 50 (1-2) :60-97
[3]   Comprehensive genomic characterization defines human glioblastoma genes and core pathways [J].
Chin, L. ;
Meyerson, M. ;
Aldape, K. ;
Bigner, D. ;
Mikkelsen, T. ;
VandenBerg, S. ;
Kahn, A. ;
Penny, R. ;
Ferguson, M. L. ;
Gerhard, D. S. ;
Getz, G. ;
Brennan, C. ;
Taylor, B. S. ;
Winckler, W. ;
Park, P. ;
Ladanyi, M. ;
Hoadley, K. A. ;
Verhaak, R. G. W. ;
Hayes, D. N. ;
Spellman, Paul T. ;
Absher, D. ;
Weir, B. A. ;
Ding, L. ;
Wheeler, D. ;
Lawrence, M. S. ;
Cibulskis, K. ;
Mardis, E. ;
Zhang, Jinghui ;
Wilson, R. K. ;
Donehower, L. ;
Wheeler, D. A. ;
Purdom, E. ;
Wallis, J. ;
Laird, P. W. ;
Herman, J. G. ;
Schuebel, K. E. ;
Weisenberger, D. J. ;
Baylin, S. B. ;
Schultz, N. ;
Yao, Jun ;
Wiedemeyer, R. ;
Weinstein, J. ;
Sander, C. ;
Gibbs, R. A. ;
Gray, J. ;
Kucherlapati, R. ;
Lander, E. S. ;
Myers, R. M. ;
Perou, C. M. ;
McLendon, Roger .
NATURE, 2008, 455 (7216) :1061-1068
[4]  
COX DR, 1972, J R STAT SOC B, V34, P187
[5]   THE USE OF THE KARNOFSKY PERFORMANCE SCALE IN DETERMINING OUTCOMES AND RISK IN GERIATRIC OUTPATIENTS [J].
CROOKS, V ;
WALLER, S ;
SMITH, T ;
HAHN, TJ .
JOURNALS OF GERONTOLOGY, 1991, 46 (04) :M139-M144
[6]   Cancer heterogeneity-a multifaceted view [J].
De Sousa E Melo, Felipe ;
Vermeulen, Louis ;
Fessler, Evelyn ;
Medema, Jan Paul .
EMBO REPORTS, 2013, 14 (08) :686-695
[7]  
DeQuardo J. R., 1996, PSYCHIAT RES NEURIMG, V67, P311
[8]  
Dryden I.L., 1998, Statistical shape analysis
[9]   Hippocampal shape analysis in Alzheimer's disease using functional data analysis [J].
Epifanio, Irene ;
Ventura-Campos, Noelia .
STATISTICS IN MEDICINE, 2014, 33 (05) :867-880
[10]   Molecular Tools: Biology, Prognosis, and Therapeutic Triage [J].
Fischer, Ingeborg ;
Aldape, Kenneth .
NEUROIMAGING CLINICS OF NORTH AMERICA, 2010, 20 (03) :273-+