3D particle averaging and detection of macromolecular symmetry in localization microscopy (vol 12, 2847, 2021)

被引:0
作者
Heydarian, Hamidreza
Joosten, Maarten
Przybylski, Adrian
Schueder, Florian
Jungmann, Ralf
van Werkhoven, Ben
Keller-Findeisen, Jan
Ries, Jonas
Stallinga, Sjoerd
Bates, Mark
Rieger, Bernd
机构
[1] Department of Imaging Physics, Delft University of Technology, Delft
[2] Department of NanoBiophotonics, Max Planck Institute for Biophysical Chemistry, Göttingen
[3] Department of Physics and Center for Nanoscience, Ludwig Maximilian University, Munich
[4] Max Planck Institute of Biochemistry, Martinsried
[5] Netherlands eScience Center, Amsterdam
[6] Cell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL), Heidelberg
基金
欧洲研究理事会;
关键词
D O I
10.1038/s41467-021-23767-9
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Single molecule localization microscopy offers in principle resolution down to the molecular level, but in practice this is limited primarily by incomplete fluorescent labeling of the structure. This missing information can be completed by merging information from many structurally identical particles. In this work, we present an approach for 3D single particle analysis in localization microscopy which hugely increases signal-to-noise ratio and resolution and enables determining the symmetry groups of macromolecular complexes. Our method does not require a structural template, and handles anisotropic localization uncertainties. We demonstrate 3D reconstructions of DNA-origami tetrahedrons, Nup96 and Nup107 subcomplexes of the nuclear pore complex acquired using multiple single molecule localization microscopy techniques, with their structural symmetry deducted from the data. © 2021, The Author(s).
引用
收藏
页数:1
相关论文
共 50 条
  • [41] ACCELERATED 3D LOCALIZATION MICROSCOPY USING BLIND SPARSE INPAINTING
    Gaire, Sunil Kumar
    Zhang, Chaoyi
    Li, Hongyu
    Huang, Peizhou
    Liu, Ruiying
    Wang, Haifeng
    Bang, Dong
    Ying, Leslie
    [J]. 2019 IEEE 16TH INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING (ISBI 2019), 2019, : 526 - 529
  • [42] Direct supercritical angle localization microscopy for nanometer 3D superresolution
    Dasgupta, Anindita
    [J]. BIOPHYSICAL JOURNAL, 2022, 121 (03) : 277A - 277A
  • [43] Towards Quantitative High-Throughput 3D Localization Microscopy
    Deschamps, Joran
    Mund, Markus
    Ries, Jonas
    [J]. BIOPHYSICAL JOURNAL, 2017, 112 (03) : 141A - 142A
  • [44] DeepSTORM3D: dense 3D localization microscopy and PSF design by deep learning (vol 54, pg 891, 2020)
    Nehme, Elias
    Freedman, Daniel
    Gordon, Racheli
    Ferdman, Boris
    Weiss, Lucien E.
    Alalouf, Onit
    Naor, Tal
    Orange, Reut
    Michaeli, Tomer
    Shechtman, Yoav
    [J]. NATURE METHODS, 2020, 17 (07) : 749 - 749
  • [45] 3D surface configuration modulates 2D symmetry detection
    Chen, Chien-Chung
    Sio, Lok-Teng
    [J]. VISION RESEARCH, 2015, 107 : 86 - 93
  • [46] SYMMETRY DETECTION FOR 2D PROJECTIONS OF 3D WIRE OBJECTS
    KNECHT, W
    LIU, ZL
    KERSTEN, D
    [J]. INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 1993, 34 (04) : 1084 - 1084
  • [47] 3D surface configuration modulated 2D symmetry detection
    Jolly, Lok-Teng Sio
    Chen, Chien-Chung
    [J]. I-PERCEPTION, 2011, 2 (04): : 404 - 404
  • [48] Automated caries detection in vivo using a 3D intraoral scanner (vol 11, 21276, 2021)
    Michou, Stavroula
    Lambach, Mathias S.
    Ntovas, Panagiotis
    Benetti, Ana R.
    Bakhshandeh, Azam
    Rahiotis, Christos
    Ekstrand, Kim R.
    Vannahme, Christoph
    [J]. SCIENTIFIC REPORTS, 2021, 11 (01)
  • [49] Automated caries detection in vivo using a 3D intraoral scanner (vol 11, 21276, 2021)
    Michou, Stavroula
    Lambach, Mathias S.
    Ntovas, Panagiotis
    Benetti, Ana R.
    Bakhshandeh, Azam
    Rahiotis, Christos
    Ekstrand, Kim R.
    Vannahme, Christoph
    [J]. SCIENTIFIC REPORTS, 2022, 12 (01)
  • [50] Nanoscale Resolution 3D Snapshot Particle Tracking by Multifocal Microscopy
    Wang, Xiaolei
    Yi, Hannah
    Gdor, Itay
    Hereld, Mark
    Scherer, Norbert F.
    [J]. NANO LETTERS, 2019, 19 (10) : 6781 - 6787