Immune cell death-related lncRNA signature as a predictive factor of clinical outcomes and immune checkpoints in gastric cancer

被引:5
|
作者
Zhang, Zeyu [1 ]
Su, Duntao [1 ]
Thakur, Abhimanyu [2 ]
Zhang, Kui [3 ]
Xia, Fada [1 ]
Yan, Yuanliang [4 ,5 ]
机构
[1] Cent South Univ, Xiangya Hosp, Dept Gen Surg, Changsha, Hunan, Peoples R China
[2] Univ Chicago, Pritzker Sch Mol Engn, Ben May Dept Canc Res, Chicago, IL USA
[3] Southwest Univ, Med Res Inst, State Key Lab Silkworm Genome Biol, Chongqing, Peoples R China
[4] Cent South Univ, Xiangya Hosp, Dept Pharm, Changsha, Hunan, Peoples R China
[5] Cent South Univ, Xiangya Hosp, Natl Clin Res Ctr Geriatr Disorders, Changsha, Hunan, Peoples R China
基金
中国国家自然科学基金;
关键词
gastric cancer; immune cell death; lncRNAs; prognostic signature; tumor immune microenvironment; HEPATOCELLULAR-CARCINOMA; MOLECULAR SUBTYPES; VALIDATION; PROGNOSIS; IMMUNOTHERAPY; BIOMARKERS; MODEL;
D O I
10.3389/fphar.2023.1162995
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Background: Immune cell death (ICD) is a type of tumor cell death that has recently been shown to activate and regulate tumor immunity. However, the role of ICD-related long non-coding RNAs (lncRNAs) in gastric cancer remains to be clarified. Methods: We obtained 375 tumor samples from the Cancer Genome Atlas (TCGA) database and randomly assigned them to training and verification groups. LASSO and Cox regression analysis were utilized to identify ICD-related lncRNAs and establish a risk model. The changes in the immune microenvironment of the two groups were compared by examining the tumor-infiltrating immune cells. Results: We established a tumor signature based on nine ICD-related lncRNAs. In light of the receiver operating characteristic and Kaplan-Meier curves, the prognostic values of this risk model were verified. Multivariate regression analysis showed that the risk score was an independent risk factor for the prognosis of patients in both the training cohort (HR 2.52; 95% CI: 1.65-3.87) and validation cohort (HR 2.70; 95% CI: 1.54-4.8). A nomogram was developed to predict the 1-, 3-, and 5-year survival of patients with gastric cancer, and the signature was linked to high levels of immunological checkpoint expression (B7-H3, VSIR). Conclusions: An ICD-related lncRNA signature could predict the immune response and prognosis of patients with gastric cancer. This prognostic signature could be employed to independently monitor the efficacy of immunotherapy for gastric cancer patients.
引用
收藏
页数:12
相关论文
共 50 条
  • [41] EFNA3 Is a Prognostic Biomarker Correlated With Immune Cell Infiltration and Immune Checkpoints in Gastric Cancer
    Zheng, Peng
    Liu, XiaoLong
    Li, Haiyuan
    Gao, Lei
    Yu, Yang
    Wang, Na
    Chen, Hao
    FRONTIERS IN GENETICS, 2022, 12
  • [42] A novel immune-related lncRNA pair signature for prognostic prediction and immune response evaluation in gastric cancer: a bioinformatics and biological validation study
    Wang, Jun
    Wang, Beidi
    Zhou, Biting
    Chen, Jing
    Qi, Jia
    Shi, Le
    Yu, Shaojun
    Chen, Guofeng
    Kang, Muxing
    Jin, Xiaoli
    Wang, Lie
    Xu, Jinghong
    Zhu, Linghua
    Chen, Jian
    CANCER CELL INTERNATIONAL, 2022, 22 (01)
  • [43] A novel immune-related lncRNA pair signature for prognostic prediction and immune response evaluation in gastric cancer: a bioinformatics and biological validation study
    Jun Wang
    Beidi Wang
    Biting Zhou
    Jing Chen
    Jia Qi
    Le Shi
    Shaojun Yu
    Guofeng Chen
    Muxing Kang
    Xiaoli Jin
    Lie Wang
    Jinghong Xu
    Linghua Zhu
    Jian Chen
    Cancer Cell International, 22
  • [44] A Novel Gene Signature Based on Immunogenic Cell Death-Related Genes Predicts the Prognosis and Immune Infiltration Status of Melanoma Patients
    Li, Wei
    Li, Lin
    Pang, Cheng
    Lu, Youqi
    Yang, Boyi
    Zhong, Rumao
    Liu, Yongzhen
    Huang, Lifeng
    Zhao, Jinmin
    JOURNAL OF BIOLOGICAL REGULATORS AND HOMEOSTATIC AGENTS, 2024, 38 (05): : 3883 - 3897
  • [45] Pan-cell death-related signature reveals tumor immune microenvironment and optimizes personalized therapy alternations in lung adenocarcinoma
    Han, Linzhi
    He, Jingyi
    Xie, Hongxin
    Gong, Yan
    Xie, Conghua
    SCIENTIFIC REPORTS, 2024, 14 (01):
  • [46] Construction of an immune-related LncRNA signature with prognostic significance for bladder cancer
    Luo, Wen-Jie
    Tian, Xi
    Xu, Wen-Hao
    Qu, Yuan-Yuan
    Zhu, Wen-Kai
    Wu, Jie
    Ma, Chun-Guang
    Zhang, Hai-Liang
    Ye, Ding-Wei
    Zhu, Yi-Ping
    JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2021, 25 (09) : 4326 - 4339
  • [47] A robust immune-related lncRNA signature for the prognosis of human colorectal cancer
    Zhu, Gongmin
    Pei, Lijiao
    Yang, Fan
    Zhang, Chenliang
    BIOSCIENCE REPORTS, 2022, 42 (07)
  • [48] Identification and Validation of a Novel Immune-Related lncRNA Signature for Bladder Cancer
    Hua, Shan
    Xie, Zhiwen
    Wang, Wenhao
    Wan, Zhong
    Chen, Min
    Zhao, Sheng
    Jiang, Juntao
    FRONTIERS IN ONCOLOGY, 2021, 11
  • [49] Identification and validation of immune-related lncRNA prognostic signature for breast cancer
    Shen, Yong
    Peng, Xiaowei
    Shen, Chuanlu
    GENOMICS, 2020, 112 (03) : 2640 - 2646
  • [50] Identification and validation of a prognostic immune-related lncRNA signature in bladder cancer
    Zhao, Kai
    Zhang, Qijie
    Zeng, Tengyue
    Zhang, Jiayi
    Song, Ninghong
    Wang, Zengjun
    TRANSLATIONAL ANDROLOGY AND UROLOGY, 2021, 10 (03) : 1229 - +