A chromosome-level genome for the flower thrips Frankliniella intonsa

被引：2

作者：

Song, Wei ^{[1
]}

Wang, Jia-Xu ^{[1
,2
]}

Cao, Li-Jun ^{[1
]}

Chen, Jin-Cui ^{[1
]}

Bao, Wen-Xue ^{[3
]}

Chen, Min ^{[2
]}

Wei, Shu-Jun ^{[1
]}

机构：

[1] Beijing Acad Agr & Forestry Sci, Inst Plant Protect, Beijing 100097, Peoples R China

[2] Beijing Forestry Univ, Beijing Key Lab Forest Pests Control, Beijing 100083, Peoples R China

[3] Inner Mongolia Agr Univ, Coll Forestry, Hohhot 010019, Peoples R China

来源：

SCIENTIFIC DATA | 2024年 / 11卷 / 01期

基金：

中国国家自然科学基金; 国家重点研发计划;

关键词：

THYSANOPTERA THRIPIDAE; ANNOTATION; BIOLOGY; TRYBOM;

D O I：

10.1038/s41597-024-03113-6

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

The flower thrips Frankliniella intonsa (Thysanoptera: Thripidae) is a common insect found in flowers of many plants. Sometimes, F. intonsa causes damage to crops through direct feeding and transmission of plant viruses. Here, we assembled a chromosomal level genome of F. intonsa using the Illumina, Oxford Nanopore (ONT), and Hi-C technologies. The assembled genome had a size of 209.09 Mb, with a contig N50 of 997 bp, scaffold N50 of 13.415 Mb, and BUSCO completeness of 92.5%. The assembled contigs were anchored on 15 chromosomes. A set of 14,109 protein-coding genes were annotated in the genome with a BUSCO completeness of 95.0%. The genome contained 491 non-coding RNA and 0.57% of interspersed repeats. This high-quality genome provides a valuable resource for understanding the ecology, genetics, and evolution of F. intonsa, as well as for controlling thrips pests.

引用

页数：7

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