Prioritization of therapeutic targets for dyslipidemia using integrative multi-omics and multi-trait analysis

被引:3
|
作者
Kim, Min Seo [1 ]
Song, Minku [1 ]
Kim, Beomsu [1 ]
Shim, Injeong [1 ]
Kim, Dan Say [1 ]
Natarajan, Pradeep [2 ,3 ,4 ]
Do, Ron [4 ,5 ,6 ]
Won, Hong-Hee [1 ,7 ]
机构
[1] Sungkyunkwan Univ, Samsung Med Ctr, Samsung Adv Inst Hlth Sci & Technol SAIHST, Seoul, South Korea
[2] Broad Inst MIT & Harvard, Med & Populat Genet & Cardiovasc Dis Initiat, Cambridge, MA USA
[3] Massachusetts Gen Hosp, Cardiovasc Res Ctr, Boston, MA USA
[4] Harvard Med Sch, Dept Med, Boston, MA USA
[5] Icahn Sch Med Mt Sinai, Charles Bronfman Inst Personalized Med, New York, NY USA
[6] Icahn Sch Med Mt Sinai, Dept Genet & Genom Sci, New York, NY USA
[7] Samsung Med Ctr, Samsung Genome Inst, Seoul, South Korea
基金
新加坡国家研究基金会; 美国国家卫生研究院;
关键词
GENOME-WIDE ASSOCIATION; MENDELIAN RANDOMIZATION; PHENOTYPE; SORT1; LDL;
D O I
10.1016/j.xcrm.2023.101112
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Drug targets with genetic support are several-fold more likely to succeed in clinical trials. We introduce a genetic-driven approach based on causal inferences that can inform drug target prioritization, repurposing, and adverse effects of using lipid-lowering agents. Given that a multi-trait approach increases the power to detect meaningful variants/genes, we conduct multiomics and multi-trait analyses, followed by network connectivity investigations, and prioritize 30 potential therapeutic targets for dyslipidemia, including SORT1, PSRC1, CELSR2, PCSK9, HMGCR, APOB, GRN, HFE2, FJX1, C1QTNF1, and SLC5A8. 20% (6/30) of prioritized targets from our hypothesis-free drug target search are either approved or under investigation for dyslipidemia. The prioritized targets are 22-fold higher in likelihood of being approved or under investigation in clinical trials than genome-wide association study (GWAS)-curated targets. Our results demonstrate that the genetic driven approach used in this study is a promising strategy for prioritizing targets while informing about the potential adverse effects and repurposing opportunities.
引用
收藏
页数:19
相关论文
共 50 条
  • [1] Prioritization of therapeutic targets for cancers using integrative multi-omics analysis
    Jin, Xin
    Mei, Yunyun
    Yang, Puyu
    Huang, Runze
    Zhang, Haifeng
    Wu, Yibin
    Wang, Miao
    He, Xigan
    Jiang, Ziting
    Zhu, Weiping
    Wang, Lu
    HUMAN GENOMICS, 2024, 18 (01)
  • [2] Novel therapeutic targets for major depressive disorder related to oxidative stress identified by integrative multi-omics and multi-trait study
    Shao, Xiaojun
    Wang, Yuan
    Geng, Zhongli
    Liang, Guangming
    Zhu, Xiaotong
    Liu, Lu
    Meng, Ming
    Duan, Li
    Zhu, Gang
    TRANSLATIONAL PSYCHIATRY, 2024, 14 (01):
  • [3] An integrative, multi-omics approach towards the prioritization of Klebsiella pneumoniae drug targets
    Ramos, Pablo Ivan Pereira
    Fernandez Do Porto, Dario
    Lanzarotti, Esteban
    Sosa, Ezequiel J.
    Burguener, German
    Pardo, Agustin M.
    Klein, Cecilia C.
    Sagot, Marie-France
    de Vasconcelos, Ana Tereza R.
    Gales, Ana Cristina
    Marti, Marcelo
    Turjanski, Adrian G.
    Nicolas, Marisa F.
    SCIENTIFIC REPORTS, 2018, 8
  • [4] An integrative, multi-omics approach towards the prioritization of Klebsiella pneumoniae drug targets
    Pablo Ivan Pereira Ramos
    Darío Fernández Do Porto
    Esteban Lanzarotti
    Ezequiel J. Sosa
    Germán Burguener
    Agustín M. Pardo
    Cecilia C. Klein
    Marie-France Sagot
    Ana Tereza R. de Vasconcelos
    Ana Cristina Gales
    Marcelo Marti
    Adrián G. Turjanski
    Marisa F. Nicolás
    Scientific Reports, 8
  • [5] Multi-Omics Integrative Analysis Uncovers Molecular Subtypes and mRNAs as Therapeutic Targets for Liver Cancer
    Shen, Yi
    Xiong, Wei
    Gu, Qi
    Zhang, Qin
    Yue, Jia
    Liu, Changsong
    Wang, Duan
    FRONTIERS IN MEDICINE, 2021, 8
  • [6] Identifying prioritization of therapeutic targets for ankylosing spondylitis: a multi-omics Mendelian randomization study
    Dai, Lingyu
    Xia, Lan
    Su, Guannan
    Gao, Yu
    Jiang, Qingyan
    Yang, Peizeng
    JOURNAL OF TRANSLATIONAL MEDICINE, 2024, 22 (01)
  • [7] Multi-Omics Reveals IBS Therapeutic Targets
    不详
    CLINICAL PHARMACOLOGY & THERAPEUTICS, 2020, 108 (06) : 1121 - 1121
  • [8] Integrative multi-omics analysis for identifying novel therapeutic targets and predicting immunotherapy efficacy in lung adenocarcinoma
    Chen, Zilu
    Mei, Kun
    Tan, Foxing
    Zhou, Yuheng
    Du, Haolin
    Wang, Min
    Gu, Renjun
    Huang, Yan
    CANCER DRUG RESISTANCE, 2025, 8
  • [9] A Customizable Analysis Flow in Integrative Multi-Omics
    Lancaster, Samuel M.
    Sanghi, Akshay
    Wu, Si
    Snyder, Michael P.
    BIOMOLECULES, 2020, 10 (12) : 1 - 15
  • [10] Identification of therapeutic targets of gallbladder cancer using multi-omics approach
    Ali, Asgar
    Ahmad, Ejaj
    Verma, Renu
    Sahu, Parameswar
    Nimisha
    Srivastava, Siddharth
    Saluja, Sundeep Singh
    BRIEFINGS IN FUNCTIONAL GENOMICS, 2023, 22 (02) : 109 - 122