Digitally enabled approaches for the scale up of mammalian cell bioreactors

被引:25
作者
Alavijeh, Masih Karimi [1 ,2 ]
Baker, Irene [3 ]
Lee, Yih Yean [3 ]
Gras, Sally L. [1 ,2 ]
机构
[1] Univ Melbourne, Dept Chem Engn, Parkville, Vic 3010, Australia
[2] Univ Melbourne, Bio21 Mol Sci & Biotechnol Inst, Parkville, Vic 3010, Australia
[3] CSL Innovat, 45 Poplar Rd, Parkville, Vic 3052, Australia
来源
DIGITAL CHEMICAL ENGINEERING | 2022年 / 4卷
关键词
Machine learning; Mechanistic modelling; Biomanufacturing; Bioreactor; COMPUTATIONAL-FLUID-DYNAMICS; LIQUID MASS-TRANSFER; MONOCLONAL-ANTIBODY PRODUCTION; ARTIFICIAL NEURAL-NETWORKS; POPULATION BALANCE MODELS; SOFT-SENSOR DEVELOPMENT; PARTIAL LEAST-SQUARES; MULTIVARIATE-ANALYSIS; PRACTICAL IDENTIFIABILITY; PHYSICAL-CHARACTERIZATION;
D O I
10.1016/j.dche.2022.100040
中图分类号
TQ [化学工业];
学科分类号
0817 ;
摘要
With recent advances in digitisation and big data analytics, more pharmaceutical firms are adopting digital tools to achieve modernisation. The biological phenomena within bioreactors are a key target for such digital approaches, as these processes are often complicated and difficult to scale. Historically, rules of thumb have been used to match performance indicators across bioreactor scales. Although such methods are well-established and frequently employed by industry, no universal solution has been developed to overcome the many challenges faced in process development and scale-up. Several computer-based methodologies can potentially be applied to bioreactor scale-up, including knowledge driven and data-driven techniques. This review assesses the state of the art in digital advances in scaling bioreactors and the advantages and limitations of scaling techniques. Traditional approaches and their constraints are outlined. The application of knowledge-based techniques is then considered and compared to data-driven models. The ability to transfer processes across bioreactor scales, to compare data and predict process indicators across scales are then examined. Finally, the role of hybrid modelling and digital twins and their potential in bioprocess development are explored.
引用
收藏
页数:23
相关论文
共 270 条
[1]   Exploring patterns enriched in a dataset with contrastive principal component analysis [J].
Abid, Abubakar ;
Zhang, Martin J. ;
Bagaria, Vivek K. ;
Zou, James .
NATURE COMMUNICATIONS, 2018, 9
[2]   Estimating reaction model parameter uncertainty with Markov Chain Monte Carlo [J].
Albrecht, Jacob .
COMPUTERS & CHEMICAL ENGINEERING, 2013, 48 :14-28
[3]  
Alkarkhi AFM, 2020, APPLIED STATISTICS FOR ENVIRONMENTAL SCIENCE WITH R, P133, DOI 10.1016/B978-0-12-818622-0.00008-3
[4]   Unified rational protein engineering with sequence-based deep representation learning [J].
Alley, Ethan C. ;
Khimulya, Grigory ;
Biswas, Surojit ;
AlQuraishi, Mohammed ;
Church, George M. .
NATURE METHODS, 2019, 16 (12) :1315-+
[5]   Kinetic models in industrial biotechnology - Improving cell factory performance [J].
Almquist, Joachim ;
Cvijovic, Marija ;
Hatzimanikatis, Vassily ;
Nielsen, Jens ;
Jirstrand, Mats .
METABOLIC ENGINEERING, 2014, 24 :38-60
[6]   Scale-down cultivation in mammalian cell bioreactors-The effect of bioreactor mixing time on the response of CHO cells to dissolved oxygen gradients [J].
Anane, Emmanuel ;
Knudsen, Ida Molgaard ;
Wilson, Giles C. .
BIOCHEMICAL ENGINEERING JOURNAL, 2021, 166
[7]   A model-based framework for parallel scale-down fed-batch cultivations in mini-bioreactors for accelerated phenotyping [J].
Anane, Emmanuel ;
Garcia, Angel Corcoles ;
Haby, Benjamin ;
Hans, Sebastian ;
Krausch, Niels ;
Krewinkel, Manuel ;
Hauptmann, Peter ;
Neubauer, Peter ;
Bournazou, Mariano Nicolas Cruz .
BIOTECHNOLOGY AND BIOENGINEERING, 2019, 116 (11) :2906-2918
[8]   Synergising stoichiometric modelling with artificial neural networks to predict antibody glycosylation patterns in Chinese hamster ovary cells [J].
Antonakoudis, Athanasios ;
Strain, Benjamin ;
Barbosa, Rodrigo ;
del Val, Ioscani Jimenez ;
Kontoravdi, Cleo .
COMPUTERS & CHEMICAL ENGINEERING, 2021, 154
[9]   A survey on modern trainable activation functions [J].
Apicella, Andrea ;
Donnarumma, Francesco ;
Isgro, Francesco ;
Prevete, Roberto .
NEURAL NETWORKS, 2021, 138 :14-32
[10]   Model-based workflow for scale-up of process strategies developed in miniaturized bioreactor systems [J].
Arndt, Lukas ;
Wiegmann, Vincent ;
Kuchemueller, Kim B. ;
Baganz, Frank ;
Poertner, Ralf ;
Moeller, Johannese .
BIOTECHNOLOGY PROGRESS, 2021, 37 (03)