Insights into gene tissue specificity and protein-protein interactions in the context of purifying selection in humans

被引:0
|
作者
Mezzavilla, Massimo [1 ,2 ,3 ]
Cocca, Massimiliano [1 ]
机构
[1] Univ Padua, Dept Biol, Padua, Italy
[2] IRCCS Burlo Garofolo, Inst Maternal & Child Hlth, Trieste, Italy
[3] Via Ugo Bassi 58-B, I-35128 Padua, Italy
关键词
protein-protein interactions; purifying selection; tissue specificity;
D O I
10.1111/ahg.12497
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Background: How much are natural selection and gene characteristics, such as the number of protein-protein interactions (PPIs), tissue specificity (tau), and expression level, connected? Methods: In order to investigate these relationships, we combined different metrics linked to genetic constraints and analyzed their distribution concerning PPIs, tau and expression levels. Results: We discovered a positive correlation between genetic constraints, PPIs, and expression levels in all tissues. On the other hand, we obtained a negative correlation between genetic constraints and tau. Furthermore, the fraction of variance in PPI and tau explained by the constraints metrics is around 6% and 10%, respectively. Conclusions: We observed that the variance of expression of tissue-specific genes seems not related to their level of selection constraints, which is the opposite of what is found on non-tissue-specific genes. Overall these observations would help to elucidate the relationship between natural selection and gene features.
引用
收藏
页码:75 / 79
页数:5
相关论文
共 50 条
  • [1] On the specificity of protein-protein interactions in the context of disorder
    Teilum, Kaare
    Olsen, Johan G.
    Kragelund, Birthe B.
    BIOCHEMICAL JOURNAL, 2021, 478 (11) : 2035 - 2050
  • [2] Evolution of Specificity in Protein-Protein Interactions
    Peleg, Orit
    Choi, Jeong-Mo
    Shakhnovich, Eugene I.
    BIOPHYSICAL JOURNAL, 2014, 107 (07) : 1686 - 1696
  • [3] Specificity and stability of transient protein-protein interactions
    Vishwanath, Sneha
    Sukhwal, Anshul
    Sowdhamini, Ramanathan
    Srinivasan, Narayanaswamy
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2017, 44 : 77 - 86
  • [4] Protein-protein interactions and selection Introduction
    Kondo, Akihiko
    FEBS JOURNAL, 2010, 277 (09) : 1981 - 1981
  • [5] Specificity and affinity quantification of protein-protein interactions
    Yan, Zhiqiang
    Guo, Liyong
    Hu, Liang
    Wang, Jin
    BIOINFORMATICS, 2013, 29 (09) : 1127 - 1133
  • [6] COMPARATIVE-ANALYSIS OF SPECIFICITY IN PROTEIN-PROTEIN INTERACTIONS .1. A THEORETICAL AND MATHEMATICAL APPROACH TO SPECIFICITY IN PROTEIN-PROTEIN INTERACTIONS
    BIRO, J
    MEDICAL HYPOTHESES, 1981, 7 (08) : 969 - 979
  • [7] Predicting protein-protein interactions in the context of protein evolution
    Lewis, Anna C. F.
    Saeed, Ramazan
    Deane, Charlotte M.
    MOLECULAR BIOSYSTEMS, 2010, 6 (01) : 55 - 64
  • [8] Specificity and promiscuity in protein-ligand and protein-protein interactions
    Colman, PM
    Smith, BJ
    AUSTRALIAN JOURNAL OF CHEMISTRY, 2003, 56 (08) : 763 - 767
  • [9] Protein-protein interactions define specificity in signal transduction
    Pawson, T
    Nash, P
    GENES & DEVELOPMENT, 2000, 14 (09) : 1027 - 1047
  • [10] TARGET SPECIFICITY AND PROTEIN-PROTEIN INTERACTIONS IN THE REGULATION OF TRANSCRIPTION BY HOX GENE-PRODUCTS
    ZAPPAVIGNA, V
    MAVILIO, F
    JOURNAL OF CELLULAR BIOCHEMISTRY, 1993, : 213 - 213