Characterization and phylogenetic analysis of the complete chloroplast genome of Emilia sonchifolia (L.) DC.

被引：3

作者：

Siu, Tin-Yan ^{[1
]}

Kong, Bobby Lim-Ho ^{[2
,3
]}

Wong, Kwan-Ho ^{[1
]}

Wu, Hoi-Yan ^{[2
]}

But, Grace Wing-Chiu ^{[3
]}

Shaw, Pang-Chui ^{[2
,3
,4
,5
]}

Lau, David Tai-Wai ^{[1
,2
]}

机构：

[1] Chinese Univ Hong Kong, Sch Life Sci, Shiu Ying Hu Herbarium, Hong Kong, Peoples R China

[2] Chinese Univ Hong Kong, Li Dak Sum Yip Yio Chin R&D Ctr Chinese Med, Hong Kong, Peoples R China

[3] Chinese Univ Hong Kong, Sch Life Sci, Hong Kong, Peoples R China

[4] Chinese Univ Hong Kong, State Key Lab Res Bioact & Clin Applicat Med Plant, Hong Kong, Peoples R China

[5] Chinese Univ Hong Kong, Inst Chinese Med, Hong Kong, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2023年 / 8卷 / 01期

关键词：

Emilia; Senecioneae; Compositae; phylogenetic analysis;

D O I：

10.1080/23802359.2022.2055980

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Emilia sonchifolia is a herb with antioxidant, anti-inflammatory, antitumor, and wound healing properties. The complete chloroplast genome (cp genome) of the genus Emilia was sequenced for the first time. The cp genome of E. sonchifolia is 151,474 bp in length. It contained a large single-copy (LSC) region (84,004 bp), and small single-copy (SSC) region (17,980 bp), and two inverted repeats (IRs, 24,745 bp). Phylogenetic analysis of 24 species was conducted. E. sonchifolia was found to be closely related to Pericallis hybrida and Dendrosenecio spp. The sequenced cp genome would be useful to understand the phylogeny and genomic studies of the genus Emilia.

引用

页码：20 / 22

页数：3

共 15 条

[1] Cass Emilia, 2019, PLANTS WORLD ONL
[2] Chen YL, 2011, FLORA CHINA, V20-21, P542
[3] Compositae Working Group, 2021, GLOB COMP DAT
[4] MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
Katoh, Kazutaka
Rozewicki, John
Yamada, Kazunori D.
[J]. BRIEFINGS IN BIOINFORMATICS, 2019, 20 (04) : 1160 - 1166
[5] The origin of Dendrosenecio within the Senecioneae (Asteraceae) based on chloroplast DNA evidence
Knox, EB
Palmer, JD
[J]. AMERICAN JOURNAL OF BOTANY, 1995, 82 (12) : 1567 - 1573
[6] MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
Kumar, Sudhir
Stecher, Glen
Li, Michael
Knyaz, Christina
Tamura, Koichiro
[J]. MOLECULAR BIOLOGY AND EVOLUTION, 2018, 35 (06) : 1547 - 1549
[7] Linnaeus C., 1753, SPECIES PLANTARUM, P835
[8] A phylogeny of Emilia (Senecioneae, Asteraceae) - implications for generic and sectional circumscription
Mapaya, Ruvimbo J.
Cron, Glynis V.
[J]. TAXON, 2021, 70 (01) : 127 - 138
[9] PATTERNS AND CAUSES OF INCONGRUENCE BETWEEN PLASTID AND NUCLEAR SENECIONEAE (ASTERACEAE) PHYLOGENIES
Pelser, Pieter B.
Kennedy, Aaron H.
Tepe, Eric J.
Shidler, Jacob B.
Nordenstam, Bertil
Kadereit, Joachim W.
Watson, Linda E.
[J]. AMERICAN JOURNAL OF BOTANY, 2010, 97 (05) : 856 - 873
[10] Antioxidant and anti-inflammatory activity of Emilia sonchifolia
Shylesh, BS
Padikkala, J
[J]. FITOTERAPIA, 1999, 70 (03) : 275 - 278

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