Colorimetric ortho-aminobenzaldehyde assay developed for the high-throughput chemical screening of inhibitors against dihydrodipicolinate synthase from pathogenic bacteria

被引:1
作者
Mitsakos, Voula [1 ,2 ]
机构
[1] Univ Melbourne, Sch Chem, Parkville, Vic 3010, Australia
[2] Univ Melbourne, Mol Sci & Biotechnol Inst Bio21, Parkville, Vic 3010, Australia
基金
澳大利亚研究理事会;
关键词
Antibiotics; Colorimetric assay; Diaminopimelate biosynthesis; Dihydrodipicolinate synthase; Enzyme inhibition; High-throughput chemical screening; Lysine; SEMIALDEHYDE CONDENSING ENZYME; X-RAY DIFFRACTION; ESCHERICHIA-COLI; LYSINE BIOSYNTHESIS; NICOTIANA-SYLVESTRIS; QUATERNARY STRUCTURE; BACILLUS-LICHENIFORMIS; PARTIAL-PURIFICATION; CRYSTAL-STRUCTURE; ACID SYNTHASE;
D O I
10.1016/j.heliyon.2023.e14304
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In search of a new class of antibacterial agents, compounds that target the essential bacterial enzyme, dihydrodipicolinate synthase (DHDPS), are of interest to drug discovery efforts. DHDPS catalyzes the first committed step in the diaminopimelate (DAP) pathway to the biosynthesis of lysine in bacteria and plants. The ortho-aminobenzaldehyde (o-ABA) assay is typically used as a qualitative tool for identifying fractions containing DHDPS during purification. This report is about the development of a high-throughput o-ABA assay format for the quantification of DHDPS enzyme activity using multi-well plates. The colorimetric assay is suitable for determining enzymatic parameters (KM and Vmax) and identifying inhibitors of DHDPS in a high-throughput screen.
引用
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页数:12
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共 75 条
[1]   Identification of the bona fide DHDPS from a common plant pathogen [J].
Atkinson, Sarah C. ;
Hor, Lilian ;
Dogovski, Con ;
Dobson, Renwick C. J. ;
Perugini, Matthew A. .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2014, 82 (09) :1869-1883
[2]   Structural, kinetic and computational investigation of Vitis vinifera DHDPS reveals new insight into the mechanism of lysine-mediated allosteric inhibition [J].
Atkinson, Sarah C. ;
Dogovski, Con ;
Downton, Matthew T. ;
Czabotar, Peter E. ;
Dobson, Renwick C. J. ;
Gerrard, Juliet A. ;
Wagner, John ;
Perugini, Matthew A. .
PLANT MOLECULAR BIOLOGY, 2013, 81 (4-5) :431-446
[3]   Crystal, Solution and In silico Structural Studies of Dihydrodipicolinate Synthase from the Common Grapevine [J].
Atkinson, Sarah C. ;
Dogovski, Con ;
Downton, Matthew T. ;
Pearce, F. Grant ;
Reboul, Cyril F. ;
Buckle, Ashley M. ;
Gerrard, Juliet A. ;
Dobson, Renwick C. J. ;
Wagner, John ;
Perugini, Matthew A. .
PLOS ONE, 2012, 7 (06)
[4]   Spectral analysis of severely overlapping spectra based on newly developed mathematical filtration techniques and ratio spectra manipulations: An application to the concurrent determination of dapoxetine and sildenafil in combined dosage form [J].
Attala, Khaled ;
Abd El-Hay, Soad S. ;
El-Henawee, Magda M. ;
Eissa, Maya S. .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2021, 255
[5]   Application of quality by design approach for HPTLC simultaneous determination of amlodipine and celecoxib in presence of process-related impurity [J].
Attala, Khaled ;
Eissa, Maya S. ;
El-Henawee, Magda M. ;
Abd El-Hay, Soad S. .
MICROCHEMICAL JOURNAL, 2021, 162
[6]   LYSINE BIOSYNTHESIS IN METHANOBACTERIUM-THERMOAUTOTROPHICUM IS BY THE DIAMINOPIMELIC ACID PATHWAY [J].
BAKHIET, N ;
FORNEY, FW ;
STAHLY, DP ;
DANIELS, L .
CURRENT MICROBIOLOGY, 1984, 10 (04) :195-198
[7]  
BARTLETT ATM, 1986, J GEN MICROBIOL, V132, P3169
[8]   CHIROSPECIFIC SYNTHESIS OF (1S,3R)-1-AMINO-3-(HYDROXYMETHYL)CYCLOPENTANE, PRECURSOR FOR CARBOCYCLIC NUCLEOSIDE SYNTHESIS - DIECKMANN CYCLIZATION WITH AN ALPHA-AMINO-ACID [J].
BERGMEIER, SC ;
COBAS, AA ;
RAPOPORT, H .
JOURNAL OF ORGANIC CHEMISTRY, 1993, 58 (09) :2369-2376
[9]   Reaction mechanism of Escherichia coli dihydrodipicolinate synthase investigated by X-ray crystallography and NMR spectroscopy [J].
Blickling, S ;
Renner, C ;
Laber, B ;
Pohlenz, HD ;
Holak, TA ;
Huber, R .
BIOCHEMISTRY, 1997, 36 (01) :24-33
[10]   ESCHERICHIA-COLI DIHYDRODIPICOLINATE SYNTHASE - CHARACTERIZATION OF THE IMINE INTERMEDIATE AND THE PRODUCT OF BROMOPYRUVATE TREATMENT BY ELECTROSPRAY MASS-SPECTROMETRY [J].
BORTHWICK, EB ;
CONNELL, SJ ;
TUDOR, DW ;
ROBINS, DJ ;
SHNEIER, A ;
ABELL, C ;
COGGINS, JR .
BIOCHEMICAL JOURNAL, 1995, 305 :521-524