Marine Dehalogenator and Its Chaperones: Microbial Duties and Responses in 2,4,6-Trichlorophenol Dechlorination

被引:7
作者
Deng, Zhaochao [1 ]
Chen, Haixin [2 ]
Wang, Jun [2 ]
Zhang, Ning [3 ]
Han, Zhiqiang [4 ]
Xie, Yeting [5 ]
Zhang, Xiaoyan [5 ]
Fang, Xiaodong [2 ]
Yu, Hao [1 ]
Zhang, Dongdong [1 ]
Yue, Zhen [2 ]
Zhang, Chunfang [1 ,5 ]
机构
[1] Zhejiang Univ, Inst Marine Biol & Pharmacol, Ocean Coll, Zhoushan 316021, Zhejiang, Peoples R China
[2] BGI Shenzhen, BGI Sanya, Sanya 572025, Peoples R China
[3] Henan Univ Sci & Technol, Sch Chem Engn & Pharm, Dept Environm Engn, Luoyang 471000, Henan, Peoples R China
[4] Zhejiang Ocean Univ, Fishery Coll, Dept Marine Resources & Environm, Zhoushan 316002, Zhejiang, Peoples R China
[5] Guilin Univ Technol, Coll Environm Sci & Engn, Guilin 541006, Guangxi, Peoples R China
基金
中国国家自然科学基金;
关键词
Peptococcaceae; Dendrosporobacter; methanogens; rdhA genes; multiomics; microbial responses; REDUCTIVE DECHLORINATION; GENOME SEQUENCE; GEN; NOV; ARCHAEA; DEHALOCOCCOIDES; PENTACHLOROPHENOL; COENZYME-F430; FERMENTATION; VITAMIN-B-12; TEMPERATURE;
D O I
10.1021/acs.est.3c03738
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
Marine environments contain diverse halogenated organiccompounds(HOCs), both anthropogenic and natural, nourishing a group of versatileorganohalide-respiring bacteria (OHRB). Here, we identified a novelOHRB (Peptococcaceae DCH) with conserved motifs but phylogeneticallydiverse reductive dehalogenase catalytic subunit (RdhAs) from marineenrichment culture. Further analyses clearly demonstrate the horizontalgene transfer of rdhAs among marine OHRB. Moreover,2,4,6-trichlorophenol (TCP) was dechlorinated to 2,4-dichlorophenoland terminated at 4-chlorophenol in culture. Dendrosporobacter and Methanosarcina were the two dominantgenera, and the constructed and verified metabolic pathways clearlydemonstrated that the former provided various substrates for othermicrobes, while the latter drew nutrients, but might provide littlebenefit to microbial dehalogenation. Furthermore, Dendrosporobacter could readily adapt to TCP, and sporulation-related proteins of Dendrosporobacter were significantly upregulatedin TCP-free controls, whereas other microbes (e.g., Methanosarcina and Aminivibrio) became more active, providing insightsinto how HOCs shape microbial communities. Additionally, sulfate couldaffect the dechlorination of Peptococcaceae DCH, but not debromination.Considering their electron accessibility and energy generation, theresults clearly demonstrate that bromophenols are more suitable thanchlorophenols for the enrichment of OHRB in marine environments. Thisstudy will greatly enhance our understanding of marine OHRB (rdhAs), auxiliary microbes, and microbial HOC adaptive mechanisms. Advancing the understanding of synergisticinteractionsin marine OHRB and their adaptive mechanisms to HOCs.
引用
收藏
页码:11300 / 11312
页数:13
相关论文
共 111 条
  • [11] GENETIC METHODS FOR METHANOSARCINA SPECIES
    Buan, Nicole
    Kulkarni, Gargi
    Metcalf, William
    [J]. METHODS IN ENZYMOLOGY: METHODS IN METHANE METABOLISM, PT A, 2011, 494 : 23 - 42
  • [12] Reconstitution of monomethylamine:Coenzyme M methyl transfer with a corrinoid protein and two methyltransferases purified from Methanosarcina barkeri
    Burke, SA
    Krzycki, JA
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (26) : 16570 - 16577
  • [13] Callahan BJ, 2016, NAT METHODS, V13, P581, DOI [10.1038/NMETH.3869, 10.1038/nmeth.3869]
  • [14] eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale
    Cantalapiedra, Carlos P.
    Hernandez-Plaza, Ana
    Letunic, Ivica
    Bork, Peer
    Huerta-Cepas, Jaime
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2021, 38 (12) : 5825 - 5829
  • [15] Responses of Coastal Marine Microbiomes Exposed to Anthropogenic Dissolved Organic Carbon
    Cerro-Galvez, Elena
    Dachs, Jordi
    Lundin, Daniel
    Fernandez-Pinos, Maria-Carmen
    Sebastian, Marta
    Vila-Costa, Maria
    [J]. ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2021, 55 (14) : 9609 - 9621
  • [16] Microbial community response to the toxic effect of pentachlorophenol in paddy soil amended with an electron donor and shuttle
    Chen, Manjia
    Tong, Hui
    Qiao, Jiangtao
    Lv, Yahui
    Jiang, Qi
    Gao, Yuanxue
    Liu, Chengshuai
    [J]. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY, 2020, 205
  • [17] fastp: an ultra-fast all-in-one FASTQ preprocessor
    Chen, Shifu
    Zhou, Yanqing
    Chen, Yaru
    Gu, Jia
    [J]. BIOINFORMATICS, 2018, 34 (17) : 884 - 890
  • [18] Improved Vitamin B12 Fermentation Process by Adding Rotenone to Regulate the Metabolism of Pseudomonas denitrificans
    Cheng, Xin
    Chen, Wei
    Peng, Wei-fu
    Li, Kun-Tai
    [J]. APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY, 2014, 173 (03) : 673 - 681
  • [19] Anaerobic Microbial Transformation of Halogenated Aromatics and Fate Prediction Using Electron Density Modeling
    Cooper, Myriel
    Wagner, Anke
    Wondrousch, Dominik
    Sonntag, Frank
    Sonnabend, Andrei
    Brehm, Martin
    Schueuermann, Gerrit
    Adrian, Lorenz
    [J]. ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2015, 49 (10) : 6018 - 6028
  • [20] Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme
    Craciun, Smaranda
    Balskus, Emily P.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (52) : 21307 - 21312