Updated phylogeny of Vestimentifera (Siboglinidae, Polychaeta, Annelida) based on mitochondrial genomes, with a new species

被引：2
作者：
McCowin, Marina F. [1 ]
Collins, Patrick C. [2 ]
Rouse, Greg W. [1 ,3 ]
机构：
[1] Univ Calif San Diego, Scripps Inst Oceanog, La Jolla, CA 92093 USA
[2] Queens Univ Belfast, Belfast BT9 5DL, Co Antrim, North Ireland
[3] South Australian Museum, North Terrace, Adelaide, SA 5000, Australia
来源：
MOLECULAR PHYLOGENETICS AND EVOLUTION | 2023年 / 187卷
基金：
美国国家科学基金会;
关键词：
Vestimentifera; Siboglinidae; Tubeworms; Chemosynthetic; Mitochondrial genome; New species; Deep-sea taxonomy; PAPUA-NEW-GUINEA; HYDROTHERMAL VENT FIELDS; MOLECULAR TAXONOMY; TUBEWORM ANNELIDA; WESTERN PACIFIC; EASTERN PACIFIC; CONTROL REGIONS; SEA; POGONOPHORA; SEQUENCE;
D O I：
10.1016/j.ympev.2023.107872
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
Siboglinid tubeworms are found at chemosynthetic environments worldwide and the Vestimentifera clade is particularly well known for their reliance on chemoautotrophic bacterial symbionts for nutrition. The mitochondrial genomes have been published for nine vestimentiferan species to date. This study provides new complete mitochondrial genomes for ten further Vestimentifera, including the first mitochondrial genomes sequenced for Alaysia spiralis, Arcovestia ivanovi, Lamellibrachia barhami, Lamellibrachia columna, Lamellibrachia donwalshi, and unnamed species of Alaysia and Oasisia. Phylogenetic analyses combining fifteen mitochondrial genes and the nuclear 18S rRNA gene recovered Lamellibrachia as sister to the remaining Vestimentifera and Riftia pachyptila as separate from the other vent-endemic taxa. Implications and auxiliary analyses regarding differing phylogenetic tree topologies, substitution saturation, ancestral state reconstruction, and divergence estimates are also discussed. Additionally, a new species of Alaysia is described from the Manus Basin.
引用
收藏
页数：16
相关论文
共 81 条
[1]   MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics [J].
Allio, Remi ;
Schomaker-Bastos, Alex ;
Romiguier, Jonathan ;
Prosdocimi, Francisco ;
Nabholz, Benoit ;
Delsuc, Frederic .
MOLECULAR ECOLOGY RESOURCES, 2020, 20 (04) :892-905
[2]   Escarpia southwardae sp nov., a new species of vestimentiferan tubeworm (Annelida, Siboglinidae) from West African cold seeps [J].
Andersen, AC ;
Hourdez, S ;
Marie, B ;
Jollivet, D ;
Lallier, FH ;
Sibuet, M .
CANADIAN JOURNAL OF ZOOLOGY-REVUE CANADIENNE DE ZOOLOGIE, 2004, 82 (06) :980-999
[3]   Median-joining networks for inferring intraspecific phylogenies [J].
Bandelt, HJ ;
Forster, P ;
Röhl, A .
MOLECULAR BIOLOGY AND EVOLUTION, 1999, 16 (01) :37-48
[4]   Identifying Hidden Rate Changes in the Evolution of a Binary Morphological Character: The Evolution of Plant Habit in Campanulid Angiosperms [J].
Beaulieu, Jeremy M. ;
O'Meara, Brian C. ;
Donoghue, Michael J. .
SYSTEMATIC BIOLOGY, 2013, 62 (05) :725-737
[5]   MITOS: Improved de novo metazoan mitochondrial genome annotation [J].
Bernt, Matthias ;
Donath, Alexander ;
Juehling, Frank ;
Externbrink, Fabian ;
Florentz, Catherine ;
Fritzsch, Guido ;
Puetz, Joern ;
Middendorf, Martin ;
Stadler, Peter F. .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) :313-319
[6]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[7]   Animal mitochondrial genomes [J].
Boore, JL .
NUCLEIC ACIDS RESEARCH, 1999, 27 (08) :1767-1780
[8]   BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis [J].
Bouckaert, Remco ;
Vaughan, Timothy G. ;
Barido-Sottani, Joelle ;
Duchene, Sebastian ;
Fourment, Mathieu ;
Gavryushkina, Alexandra ;
Heled, Joseph ;
Jones, Graham ;
Kuehnert, Denise ;
De Maio, Nicola ;
Matschiner, Michael ;
Mendes, Fabio K. ;
Mueller, Nicola F. ;
Ogilvie, Huw A. ;
du Plessis, Louis ;
Popinga, Alex ;
Rambaut, Andrew ;
Rasmussen, David ;
Siveroni, Igor ;
Suchard, Marc A. ;
Wu, Chieh-Hsi ;
Xie, Dong ;
Zhang, Chi ;
Stadler, Tanja ;
Drummond, Alexei J. .
PLOS COMPUTATIONAL BIOLOGY, 2019, 15 (04)
[9]  
Bright M, 2010, OCEANOGR MAR BIOL, V48, P213
[10]  
Caullery M, 1914, CR HEBD ACAD SCI, V158, P2014
123456789