Assessment of Alzheimer-related pathologies of dementia using machine learning feature selection

被引:4
作者
Rajab, Mohammed D. [1 ,2 ]
Jammeh, Emmanuel [1 ]
Taketa, Teruka [1 ]
Brayne, Carol [3 ]
Matthews, Fiona E. [4 ]
Su, Li [1 ,5 ]
Ince, Paul G. [1 ]
Wharton, Stephen B. [1 ]
Wang, Dennis [1 ,2 ,6 ,7 ]
机构
[1] Univ Sheffield, Sheffield Inst Translat Neurosci, Sheffield S10 2HQ, England
[2] Univ Sheffield, Dept Comp Sci, Sheffield S1 4DP, England
[3] Cambridge Publ Hlth, Cambridge CB2 1PZ, England
[4] Newcastle Univ, Populat Hlth Sci Inst, Newcastle Upon Tyne NE4 5PL, England
[5] Univ Cambridge, Dept Psychiat, Cambridge CB2 0SP, England
[6] ASTAR, Singapore Inst Clin Sci, Singapore 117609, Singapore
[7] Imperial Coll London, Natl Heart & Lung Inst, London SW3 6LY, England
基金
英国工程与自然科学研究理事会; 英国医学研究理事会;
关键词
Dementia; Alzheimer's; Feature selection; Machine learning; Neuropathology; Beta-amyloid; NEUROFIBRILLARY PATHOLOGY; COGNITIVE FUNCTION; TAU PATHOLOGY; DISEASE; BRAIN; NEUROPATHOLOGY; PREVALENCE; RELEVANCE; COMMON; OLD;
D O I
10.1186/s13195-023-01195-9
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Although a variety of brain lesions may contribute to the pathological assessment of dementia, the relationship of these lesions to dementia, how they interact and how to quantify them remains uncertain. Systematically assessing neuropathological measures by their degree of association with dementia may lead to better diagnostic systems and treatment targets. This study aims to apply machine learning approaches to feature selection in order to identify critical features of Alzheimer-related pathologies associated with dementia. We applied machine learning techniques for feature ranking and classification to objectively compare neuropathological features and their relationship to dementia status during life using a cohort (n=186) from the Cognitive Function and Ageing Study (CFAS). We first tested Alzheimer's Disease and tau markers and then other neuropathologies associated with dementia. Seven feature ranking methods using different information criteria consistently ranked 22 out of the 34 neuropathology features for importance to dementia classification. Although highly correlated, Braak neurofibrillary tangle stage, beta-amyloid and cerebral amyloid angiopathy features were ranked the highest. The best-performing dementia classifier using the top eight neuropathological features achieved 79% sensitivity, 69% specificity and 75% precision. However, when assessing all seven classifiers and the 22 ranked features, a substantial proportion (40.4%) of dementia cases was consistently misclassified. These results highlight the benefits of using machine learning to identify critical indices of plaque, tangle and cerebral amyloid angiopathy burdens that may be useful for classifying dementia.
引用
收藏
页数:17
相关论文
共 74 条
[1]   Prominent feature extraction for review analysis: an empirical study [J].
Agarwal, Basant ;
Mittal, Namita .
JOURNAL OF EXPERIMENTAL & THEORETICAL ARTIFICIAL INTELLIGENCE, 2016, 28 (03) :485-498
[2]   Staging of neurofibrillary pathology in Alzheimer's disease:: A study of the BrainNet Europe consortium [J].
Alafuzoff, Irina ;
Arzberger, Thomas ;
Al-Sarraj, Safa ;
Bodi, Istvan ;
Bogdanovic, Nenad ;
Braak, Heiko ;
Bugiani, Orso ;
Del-Tredici, Kelly ;
Ferrer, Isidro ;
Gelpi, Ellen ;
Giaccone, Giorgio ;
Graeber, Manuel B. ;
Ince, Paul ;
Kamphorst, Wouter ;
King, Andrew ;
Korkolopoulou, Penelope ;
Kovacs, Gabor G. ;
Larionov, Sergey ;
Meyronet, David ;
Monoranu, Camelia ;
Parchi, Piero ;
Patsouris, Efstratios ;
Roggendorf, Wolfgang ;
Seilhean, Danielle ;
Tagliavini, Fabrizio ;
Stadelmann, Christine ;
Streichenberger, Nathalie ;
Thal, Dietmar R. ;
Wharton, Stephen B. ;
Kretzschmar, Hans .
BRAIN PATHOLOGY, 2008, 18 (04) :484-496
[3]   Assessment of β-amyloid deposits in human brain: a study of the BrainNet Europe Consortium [J].
Alafuzoff, Irina ;
Thal, Dietmar R. ;
Arzberger, Thomas ;
Bogdanovic, Nenad ;
Al-Sarraj, Safa ;
Bodi, Istvan ;
Boluda, Susan ;
Bugiani, Orso ;
Duyckaerts, Charles ;
Gelpi, Ellen ;
Gentleman, Stephen ;
Giaccone, Giorgio ;
Graeber, Manuel ;
Hortobagyi, Tibor ;
Hoeftberger, Romana ;
Ince, Paul ;
Ironside, James W. ;
Kavantzas, Nikolaos ;
King, Andrew ;
Korkolopoulou, Penelope ;
Kovacs, Gabor G. ;
Meyronet, David ;
Monoranu, Camelia ;
Nilsson, Tatjana ;
Parchi, Piero ;
Patsouris, Efstratios ;
Pikkarainen, Maria ;
Revesz, Tamas ;
Rozemuller, Annemieke ;
Seilhean, Danielle ;
Schulz-Schaeffer, Walter ;
Streichenberger, Nathalie ;
Wharton, Stephen B. ;
Kretzschmar, Hans .
ACTA NEUROPATHOLOGICA, 2009, 117 (03) :309-320
[4]  
Allen TA, 2020, J PERS DISORD, V34, P650, DOI 10.1521/pedi.2020.34.5.650
[5]  
[Anonymous], 1980, Diagnostic and Statistical Manual of Mental Disorders, V3rd, DOI [10.1176/appi.books.9780890425787, DOI 10.1176/APPI.BOOKS.9780890425787, DOI 10.1176/APPI.BOOKS.9780890425596]
[6]   Cerebrospinal Fluid Biomarkers in Cerebral Amyloid Angiopathy [J].
Banerjee, Gargi ;
Ambler, Gareth ;
Keshavan, Ashvini ;
Paterson, Ross W. ;
Foiani, Martha S. ;
Toombs, Jamie ;
Heslegrave, Amanda ;
Dickson, John C. ;
Fraioli, Francesco ;
Groves, Ashley M. ;
Lunn, Michael P. ;
Fox, Nick C. ;
Zetterberg, Henrik ;
Schott, Jonathan M. ;
Werring, David J. .
JOURNAL OF ALZHEIMERS DISEASE, 2020, 74 (04) :1189-1201
[7]   Relative frequencies of Alzheimer disease, Lewy body, vascular and frontotemporal dementia, and hippocampal sclerosis in the state of Florida Brain Bank [J].
Barker, WW ;
Luis, CA ;
Kashuba, A ;
Luis, M ;
Harwood, DG ;
Loewenstein, D ;
Waters, C ;
Jimison, P ;
Shepherd, E ;
Sevush, S ;
Graff-Radford, N ;
Newland, D ;
Todd, M ;
Miller, B ;
Gold, M ;
Heilman, K ;
Doty, L ;
Goodman, I ;
Robinson, B ;
Pearl, G ;
Dickson, D ;
Duara, R .
ALZHEIMER DISEASE & ASSOCIATED DISORDERS, 2002, 16 (04) :203-212
[8]   The Rush Memory and Aging Project: Study design and baseline characteristics of the study cohort [J].
Bennett, DA ;
Schneider, JA ;
Buchman, AS ;
de Leon, CM ;
Bienias, JL ;
Wilson, RS .
NEUROEPIDEMIOLOGY, 2005, 25 (04) :163-175
[9]   Attributable risk of Alzheimer's dementia attributed to age-related neuropathologies [J].
Boyle, Patricia A. ;
Yu, Lei ;
Leurgans, Sue E. ;
Wilson, Robert S. ;
Brookmeyer, Ron ;
Schneider, Julie A. ;
Bennett, David A. .
ANNALS OF NEUROLOGY, 2019, 85 (01) :114-124
[10]   Person-Specific Contribution of Neuropathologies to Cognitive Loss in Old Age [J].
Boyle, Patricia A. ;
Yu, Lei ;
Wilson, Robert S. ;
Leurgans, Sue E. ;
Schneider, Julie A. ;
Bennett, David A. .
ANNALS OF NEUROLOGY, 2018, 83 (01) :74-83