Inter-bacterial mutualism promoted by public goods in a system characterized by deterministic temperature variation

被引:93
作者
Zhao, Yuxiang [1 ]
Liu, Zishu [1 ]
Zhang, Baofeng [2 ]
Cai, Jingjie [1 ]
Yao, Xiangwu [1 ]
Zhang, Meng [1 ]
Deng, Ye [3 ,4 ]
Hu, Baolan [1 ,5 ,6 ]
机构
[1] Zhejiang Univ, Coll Environm & Resource Sci, Hangzhou, Peoples R China
[2] Hangzhou Ecol & Environm Monitoring Ctr, Hangzhou 310007, Peoples R China
[3] Chinese Acad Sci, Res Ctr Ecoenvironm Sci, CAS Key Lab Environm Biotechnol, Beijing, Peoples R China
[4] Univ Chinese Acad Sci, Coll Resources & Environm, Beijing, Peoples R China
[5] Zhejiang Prov Key Lab Water Pollut Control & Envir, Hangzhou, Peoples R China
[6] Zhejiang Univ, Coll Environm & Resource Sci, Key Lab Environm Remediat & Ecol Hlth, Minist Educ, Hangzhou, Peoples R China
关键词
DIVERSITY; WATER; STRATEGIES; NETWORKS; DYNAMICS; SLUDGE; MODEL;
D O I
10.1038/s41467-023-41224-7
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Mutualism is commonly observed in nature but not often reported for bacterial communities. Although abiotic stress is thought to promote microbial mutualism, there is a paucity of research in this area. Here, we monitor microbial communities in a quasi-natural composting system, where temperature variation (20 degrees C-70 degrees C) is the main abiotic stress. Genomic analyses and culturing experiments provide evidence that temperature selects for slow-growing and stress-tolerant strains (i.e., Thermobifida fusca and Saccharomonospora viridis), and mutualistic interactions emerge between them and the remaining strains through the sharing of cobalamin. Comparison of 3000 bacterial pairings reveals that mutualism is common (similar to 39.1%) and competition is rare (similar to 13.9%) in pairs involving T. fusca and S. viridis. Overall, our work provides insights into how high temperature can favour mutualism and reduce competition at both the community and species levels.
引用
收藏
页数:12
相关论文
共 69 条
[1]   Warmer temperatures favor slower-growing bacteria in natural marine communities [J].
Abreu, Clare I. ;
Dal Bello, Martina ;
Bunse, Carina ;
Pinhassi, Jarone ;
Gore, Jeff .
SCIENCE ADVANCES, 2023, 9 (19)
[2]   Overflow metabolism in Escherichia coli results from efficient proteome allocation [J].
Basan, Markus ;
Hui, Sheng ;
Okano, Hiroyuki ;
Zhang, Zhongge ;
Shen, Yang ;
Williamson, James R. ;
Hwa, Terence .
NATURE, 2015, 528 (7580) :99-+
[3]   POSITIVE INTERACTIONS IN COMMUNITIES [J].
BERTNESS, MD ;
CALLAWAY, R .
TRENDS IN ECOLOGY & EVOLUTION, 1994, 9 (05) :191-193
[4]   Influence of vitamin B auxotrophy on nitrogen metabolism in eukaryotic phytoplankton [J].
Bertrand, Erin M. ;
Allen, Andrew E. .
FRONTIERS IN MICROBIOLOGY, 2012, 3
[5]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[6]   Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea [J].
Bowers, Robert M. ;
Kyrpides, Nikos C. ;
Stepanauskas, Ramunas ;
Harmon-Smith, Miranda ;
Doud, Devin ;
Reddy, T. B. K. ;
Schulz, Frederik ;
Jarett, Jessica ;
Rivers, Adam R. ;
Eloe-Fadrosh, Emiley A. ;
Tringe, Susannah G. ;
Ivanova, Natalia N. ;
Copeland, Alex ;
Clum, Alicia ;
Becraft, Eric D. ;
Malmstrom, Rex R. ;
Birren, Bruce ;
Podar, Mircea ;
Bork, Peer ;
Weinstock, George M. ;
Garrity, George M. ;
Dodsworth, Jeremy A. ;
Yooseph, Shibu ;
Sutton, Granger ;
Gloeckner, Frank O. ;
Gilbert, Jack A. ;
Nelson, William C. ;
Hallam, Steven J. ;
Jungbluth, Sean P. ;
Ettema, Thijs J. G. ;
Tighe, Scott ;
Konstantinidis, Konstantinos T. ;
Liu, Wen-Tso ;
Baker, Brett J. ;
Rattei, Thomas ;
Eisen, Jonathan A. ;
Hedlund, Brian ;
McMahon, Katherine D. ;
Fierer, Noah ;
Knight, Rob ;
Finn, Rob ;
Cochrane, Guy ;
Karsch-Mizrachi, Ilene ;
Tyson, Gene W. ;
Rinke, Christian ;
Lapidus, Alla ;
Meyer, Folker ;
Yilmaz, Pelin ;
Parks, Donovan H. ;
Eren, A. M. .
NATURE BIOTECHNOLOGY, 2017, 35 (08) :725-731
[7]   A global network of coexisting microbes from environmental and whole-genome sequence data [J].
Chaffron, Samuel ;
Rehrauer, Hubert ;
Pernthaler, Jakob ;
von Mering, Christian .
GENOME RESEARCH, 2010, 20 (07) :947-959
[8]   Cross-exchange of B-vitamins underpins a mutualistic interaction between Ostreococcus tauri and Dinoroseobacter shibae [J].
Cooper, Matthew B. ;
Kazamia, Elena ;
Helliwell, Katherine E. ;
Kudahl, Ulrich Johan ;
Sayer, Andrew ;
Wheeler, Glen L. ;
Smith, Alison G. .
ISME JOURNAL, 2019, 13 (02) :334-345
[9]   Algae acquire vitamin B12 through a symbiotic relationship with bacteria [J].
Croft, MT ;
Lawrence, AD ;
Raux-Deery, E ;
Warren, MJ ;
Smith, AG .
NATURE, 2005, 438 (7064) :90-93
[10]   Ecology and evolution of metabolic cross-feeding interactions in bacteria [J].
D'Souza, Glen ;
Shitut, Shraddha ;
Preussger, Daniel ;
Yousif, Ghada ;
Waschina, Silvio ;
Kost, Christian .
NATURAL PRODUCT REPORTS, 2018, 35 (05) :455-488