Collaborative benchmarking of functional-structural root architecture models: Quantitative comparison of simulated root water uptake

被引:7
作者
Schnepf, Andrea [1 ,14 ]
Black, Christopher K. [2 ]
Couvreur, Valentin [3 ]
Delory, Benjamin M. [4 ]
Doussan, Claude [5 ]
Heymans, Adrien [3 ]
Javaux, Mathieu [1 ,6 ]
Khare, Deepanshu [1 ,14 ]
Koch, Axelle [6 ]
Koch, Timo [7 ,8 ,9 ]
Kuppe, Christian W. [10 ,11 ]
Landl, Magdalena [1 ,14 ]
Leitner, Daniel [1 ,14 ]
Lobet, Guillaume [1 ,14 ]
Meunier, Felicien [11 ,12 ]
Postma, Johannes A. [10 ]
Schaefer, Ernst D. [2 ,13 ]
Selzner, Tobias [1 ,14 ]
Vanderborght, Jan [1 ,14 ]
Vereecken, Harry [1 ,14 ]
机构
[1] Forschungszentrum Julich, Inst Bioand Geosci Agrosphere IBG 3, D-52425 Julich, Germany
[2] Penn State Univ, Dept Plant Sci, 102 Tyson Bldg, University Pk, PA 16802 USA
[3] Catholic Univ Louvain, Earth & Life Inst, Agron, Louvain la-neuve, Belgium
[4] Leuphana Univ Luneburg, Inst Ecol, Univ allee 1, D-21335 Louvain la Neuve, Germany
[5] Avignon Univ, INRAE, EMMAH, F-84000 Avignon, France
[6] Catholic Univ Louvain, Environm Sci Earth & Life Inst, Louvain la neuve, Belgium
[7] Univ Oslo, Dept Math, Postboks 1053, N-0316 Oslo, Norway
[8] SCAN Dept, Simula Res Lab, Kristian Augusts gate 23, N-0164 Oslo, Norway
[9] Univ Stuttgart, Dept Hydromech & Modelling Hydrosyst, Pfaffenwaldring 61, D-70569 Stuttgart, Germany
[10] Forschungszentrum Julich, Inst Bioand Geosci Plant Sci IBG 2, D-52425 Julich, Germany
[11] Univ Ghent, CAVElab Computat & Appl Vegetat Ecol, Ghent, Belgium
[12] Boston Univ, Dept Earth & Environm, Boston, MA USA
[13] Univ Nottingham, Sch Math Sci, Math Sci Bldg, Univ Pk, Nottingham NG7 2RD, England
[14] Int Soil Modelling Consortium ISMC, Julich, Germany
来源
IN SILICO PLANTS | 2023年 / 5卷 / 01期
基金
欧盟地平线“2020”; 欧洲研究理事会;
关键词
Functional-structural root architecture models; model comparison; benchmark; root water uptake; quantitative comparison; SOIL-WATER; POTASSIUM UPTAKE; PLANT-ROOTS; FLOW; TRANSPORT; SYSTEM; EXPLICIT; GROWTH; RHIZOSPHERE; INTERFACE;
D O I
10.1093/insilicoplants/diad005
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Functional-structural root architecture models have evolved as tools for the design of improved agricultural management practices and for the selection of optimal root traits. In order to test their accuracy and reliability, we present the first benchmarking of root water uptake from soil using five well-established functional-structural root architecture models: DuMux, CPlantBox, R-SWMS, OpenSimRoot and SRI. The benchmark scenarios include basic tests for water flow in soil and roots as well as advanced tests for the coupled soil-root system. The reference solutions and the solutions of the different simulators are available through Jupyter Notebooks on a GitHub repository. All of the simulators were able to pass the basic tests and continued to perform well in the benchmarks for the coupled soil-plant system. For the advanced tests, we created an overview of the different ways of coupling the soil and the root domains as well as the different methods used to account for rhizosphere resistance to water flow. Although the methods used for coupling and modelling rhizosphere resistance were quite different, all simulators were in reasonably good agreement with the reference solution. During this benchmarking effort, individual simulators were able to learn about their strengths and challenges, while some were even able to improve their code. Some now include the benchmarks as standard tests within their codes. Additional model results may be added to the GitHub repository at any point in the future and will be automatically included in the comparison.
引用
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页数:21
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