A Morphology Focused Diffusion Probabilistic Model for Synthesis of Histopathology Images

被引:53
作者
Moghadam, Puria Azadi [1 ]
Van Dalen, Sanne [2 ]
Martin, Karina C. [3 ]
Lennerz, Jochen [4 ]
Yip, Stephen [3 ]
Farahani, Hossein [1 ]
机构
[1] Univ British Columbia, Vancouver, BC, Canada
[2] Eindhoven Univ Technol, Eindhoven, Netherlands
[3] BC Canc Agcy, Vancouver, BC, Canada
[4] Harvard Med Sch, Boston, MA USA
来源
2023 IEEE/CVF WINTER CONFERENCE ON APPLICATIONS OF COMPUTER VISION (WACV) | 2023年
基金
加拿大自然科学与工程研究理事会;
关键词
D O I
10.1109/WACV56688.2023.00204
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Visual microscopic study of diseased tissue by pathologists has been the cornerstone for cancer diagnosis and prognostication for more than a century. Recently, deep learning methods have made significant advances in the analysis and classification of tissue images. However, there has been limited work on the utility of such models in generating histopathology images. These synthetic images have several applications in pathology including utilities in education, proficiency testing, privacy, and data sharing. Recently, diffusion probabilistic models were introduced to generate high quality images. Here, for the first time, we investigate the potential use of such models along with prioritized morphology weighting and color normalization to synthesize high quality histopathology images of brain cancer. Our detailed results show that diffusion probabilistic models are capable of synthesizing a wide range of histopathology images and have superior performance compared to generative adversarial networks.
引用
收藏
页码:1999 / 2008
页数:10
相关论文
共 46 条
[1]  
Alturkistani Hani A, 2015, Glob J Health Sci, V8, P72, DOI 10.5539/gjhs.v8n3p72
[2]  
Amit Tomer, 2021, ABS211200390 CORR
[3]  
[Anonymous], 2018, CoRR
[4]  
[Anonymous], 2022, ANN C MED IM UND AN, DOI DOI 10.1109/QRS-C57518.2022.00074
[5]   The utility of color normalization for AI-based diagnosis of hematoxylin and eosin-stained pathology images [J].
Boschman, Jeffrey ;
Farahani, Hossein ;
Darbandsari, Amirali ;
Ahmadvand, Pouya ;
Van Spankeren, Ashley ;
Farnell, David ;
Levine, Adrian B. ;
Naso, Julia R. ;
Churg, Andrew ;
Jones, Steven J. M. ;
Yip, Stephen ;
Kobel, Martin ;
Huntsman, David G. ;
Gilks, C. Blake ;
Bashashati, Ali .
JOURNAL OF PATHOLOGY, 2022, 256 (01) :15-24
[6]   Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas [J].
Brat, Daniel J. ;
Verhaak, Roel G. W. ;
Al-dape, Kenneth D. ;
Yung, W. K. Alfred ;
Salama, Sofie R. ;
Cooper, Lee A. D. ;
Rheinbay, Esther ;
Miller, C. Ryan ;
Vitucci, Mark ;
Morozova, Olena ;
Robertson, A. Gordon ;
Noushmehr, Houtan ;
Laird, Peter W. ;
Cherniack, Andrew D. ;
Akbani, Rehan ;
Huse, Jason T. ;
Ciriello, Giovanni ;
Poisson, Laila M. ;
Barnholtz-Sloan, Jill S. ;
Berger, Mitchel S. ;
Brennan, Cameron ;
Colen, Rivka R. ;
Colman, Howard ;
Flanders, Adam E. ;
Giannini, Caterina ;
Grifford, Mia ;
Iavarone, Antonio ;
Jain, Rajan ;
Joseph, Isaac ;
Kim, Jaegil ;
Kasaian, Katayoon ;
Mikkelsen, Tom ;
Murray, Bradley A. ;
O'Neill, Brian Patrick ;
Pachter, Lior ;
Parsons, Donald W. ;
Sougnez, Carrie ;
Sulman, Erik P. ;
Vandenberg, Scott R. ;
Van Meir, Erwin G. ;
von Deimling, Andreas ;
Zhang, Hailei ;
Crain, Daniel ;
Lau, Kevin ;
Mallery, David ;
Morris, Scott ;
Paulauskis, Joseph ;
Penny, Robert ;
Shelton, Troy ;
Sherman, Mark .
NEW ENGLAND JOURNAL OF MEDICINE, 2015, 372 (26) :2481-2498
[7]  
Brock A., 2019, Large scale gan training for high fidelity natural image synthesis
[8]   Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma [J].
Ceccarelli, Michele ;
Barthel, Floris P. ;
Malta, Tathiane M. ;
Sabedot, Thais S. ;
Salama, Sofie R. ;
Murray, Bradley A. ;
Morozova, Olena ;
Newton, Yulia ;
Radenbaugh, Amie ;
Pagnotta, Stefano M. ;
Anjum, Samreen ;
Wang, Jiguang ;
Manyam, Ganiraju ;
Zoppoli, Pietro ;
Ling, Shiyun ;
Rao, Arjun A. ;
Grifford, Mia ;
Cherniack, Andrew D. ;
Zhang, Hailei ;
Poisson, Laila ;
Carlotti, Carlos Gilberto, Jr. ;
Tirapelli, Daniela Pretti da Cunha ;
Rao, Arvind ;
Mikkelsen, Tom ;
Lau, Ching C. ;
Yung, W. K. Alfred ;
Rabadan, Raul ;
Huse, Jason ;
Brat, Daniel J. ;
Lehman, Norman L. ;
Barnholtz-Sloan, Jill S. ;
Zheng, Siyuan ;
Hess, Kenneth ;
Rao, Ganesh ;
Meyerson, Matthew ;
Beroukhim, Rameen ;
Cooper, Lee ;
Akbani, Rehan ;
Wrensch, Margaret ;
Haussler, David ;
Aldape, Kenneth D. ;
Laird, Peter W. ;
Gutmann, David H. ;
Noushmehr, Houtan ;
Iavarone, Antonio ;
Verhaak, Roel G. W. .
CELL, 2016, 164 (03) :550-563
[9]  
Crane Genevieve M, 2016, AMA J Ethics, V18, P817, DOI 10.1001/journalofethics.2016.18.8.stas1-1608
[10]   Oligodendrogliomas .1. Patterns of growth, histological diagnosis, clinical and imaging correlations: A study of 153 cases [J].
DaumasDuport, C ;
Varlet, P ;
Tucker, ML ;
Beuvon, F ;
Cervera, P ;
Chodkiewicz, JP .
JOURNAL OF NEURO-ONCOLOGY, 1997, 34 (01) :37-59