An Aggrephagy-Related LncRNA Signature for the Prognosis of Pancreatic Adenocarcinoma

被引:34
作者
Huang, Xueyuan [1 ,2 ]
Chi, Hao [2 ]
Gou, Siqi [2 ]
Guo, Xiyuan [1 ]
Li, Lin [1 ]
Peng, Gaoge [2 ]
Zhang, Jinhao [3 ]
Xu, Jiayu [4 ]
Nian, Siji [1 ]
Yuan, Qing [1 ]
机构
[1] Southwest Med Univ, Sch Basic Med Sci, Publ Ctr Expt Technol, Immune Mech & Therapy Major Dis Luzhou Key Lab, Luzhou 646000, Peoples R China
[2] Southwest Med Univ, Clin Med Coll, Luzhou 646000, Peoples R China
[3] Southwest Med Univ, Sch Stomatol, Luzhou 646000, Peoples R China
[4] Minzu Univ China, Sch Sci, Stat Dept, Beijing 100081, Peoples R China
关键词
aggrephagy; immunotherapy; LncRNA; PAAD; prognostic signature; TUMOR MUTATIONAL BURDEN; CELL LUNG-CANCER; INTERFERON-GAMMA; COLORECTAL-CANCER; PD-1; BLOCKADE; AUTOPHAGY; CASC8; METASTASIS; MICROENVIRONMENT; SUSCEPTIBILITY;
D O I
10.3390/genes14010124
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Pancreatic adenocarcinoma (PAAD) is a common, highly malignant, and aggressive gastrointestinal tumor. The conventional treatment of PAAD shows poor results, and patients have poor prognosis. The synthesis and degradation of proteins are essential for the occurrence and development of tumors. Aggrephagy is a type of autophagy that selectively degrades aggregated proteins. It decreases the formation of aggregates by degrading proteins, thus reducing the harm to cells. By breaking down proteins, it decreases the formation of aggregates; thus, minimizing damage to cells. For evaluating the response to immunotherapy and prognosis in PAAD patients, in this study, we developed a reliable signature based on aggrephagy-related genes (ARGs). We obtained 298 AGGLncRNAs. Based on the results of one-way Cox and LASSO analyses, the lncRNA signature was constructed. In the risk model, the prognosis of patients in the low-risk group was noticeably better than that of the patients in the high-risk group. Additionally, the ROC curves and nomograms validated the capacity of the risk model to predict the prognosis of PAAD. The patients in the low-risk and high-risk groups showed considerable variations in functional enrichment and immunological analysis. Regarding drug sensitivity, the low-risk and high-risk groups had different half-maximal inhibitory concentrations (IC50).
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页数:21
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共 71 条
  • [1] xCell: digitally portraying the tissue cellular heterogeneity landscape
    Aran, Dvir
    Hu, Zicheng
    Butte, Atul J.
    [J]. GENOME BIOLOGY, 2017, 18
  • [2] Type III interferons: Balancing tissue tolerance and resistance to pathogen invasion
    Broggi, Achille
    Granucci, Francesca
    Zanoni, Ivan
    [J]. JOURNAL OF EXPERIMENTAL MEDICINE, 2020, 217 (01)
  • [3] IFN-γ: A cytokine at the right time, is in the right place
    Burke, J. Daniel
    Young, Howard A.
    [J]. SEMINARS IN IMMUNOLOGY, 2019, 43
  • [4] International Cancer of the Pancreas Screening (CAPS) Consortium summit on the management of patients with increased risk for familial pancreatic cancer
    Canto, Marcia Irene
    Harinck, Femme
    Hruban, Ralph H.
    Offerhaus, George Johan
    Poley, Jan-Werner
    Kamel, Ihab
    Nio, Yung
    Schulick, Richard S.
    Bassi, Claudio
    Kluijt, Irma
    Levy, Michael J.
    Chak, Amitabh
    Fockens, Paul
    Goggins, Michael
    Bruno, Marco
    [J]. GUT, 2013, 62 (03) : 339 - 347
  • [5] Type I IFN family members: Similarity, differences and interaction
    Capobianchi, Maria Rosaria
    Uleri, Elena
    Caglioti, Claudia
    Dolei, Antonina
    [J]. CYTOKINE & GROWTH FACTOR REVIEWS, 2015, 26 (02) : 103 - 111
  • [6] Interferon-Gamma at the Crossroads of Tumor Immune Surveillance or Evasion
    Castro, Flavia
    Cardoso, Ana Patricia
    Goncalves, Raquel Madeira
    Serre, Karine
    Oliveira, Maria Jose
    [J]. FRONTIERS IN IMMUNOLOGY, 2018, 9
  • [7] Chen BB, 2018, METHODS MOL BIOL, V1711, P243, DOI 10.1007/978-1-4939-7493-1_12
  • [8] LNMAT1 promotes lymphatic metastasis of bladder cancer via CCL2 dependent macrophage recruitment
    Chen, Changhao
    He, Wang
    Huang, Jian
    Wang, Bo
    Li, Hui
    Cai, Qingqing
    Su, Feng
    Bi, Junming
    Liu, Hongwei
    Zhang, Bin
    Jiang, Ning
    Zhong, Guangzheng
    Zhao, Yue
    Dong, Wen
    Lin, Tianxin
    [J]. NATURE COMMUNICATIONS, 2018, 9
  • [9] Preeclampsia and health risks later in life: an immunological link
    Cheng, Shi-Bin
    Sharma, Surendra
    [J]. SEMINARS IN IMMUNOPATHOLOGY, 2016, 38 (06) : 699 - 708
  • [10] Cuprotosis Programmed-Cell-Death-Related lncRNA Signature Predicts Prognosis and Immune Landscape in PAAD Patients
    Chi, Hao
    Peng, Gaoge
    Wang, Rui
    Yang, Fengyi
    Xie, Xixi
    Zhang, Jinhao
    Xu, Ke
    Gu, Tao
    Yang, Xiaoli
    Tian, Gang
    [J]. CELLS, 2022, 11 (21)