A novel dilated contextual attention module for breast cancer mitosis cell detection

被引:0
作者
Li, Zhiqiang [1 ]
Li, Xiangkui [2 ]
Wu, Weixuan [1 ]
Lyu, He [1 ]
Tang, Xuezhi [1 ]
Zhou, Chenchen [1 ]
Xu, Fanxin [3 ]
Luo, Bin [4 ]
Jiang, Yulian [1 ]
Liu, Xingwen [1 ]
Xiang, Wei [1 ]
机构
[1] Southwest Minzu Univ, Key Lab Elect & Informat Engn, State Ethn Affairs Commiss, Chengdu, Sichuan, Peoples R China
[2] Harbin Univ Sci & Technol, Sch Comp Sci & Technol, Harbin, Peoples R China
[3] Chongqing Univ Posts & Telecommun, Chongqing Key Lab Computat Intelligence, Chongqing, Peoples R China
[4] Sichuan Huhui Software Co Ltd, Mianyang, Sichuan, Peoples R China
关键词
mitosis detection; mitotic count; dilated attention; whole slide image; multi-stage deep learning; SEGMENTATION;
D O I
10.3389/fphys.2024.1337554
中图分类号
Q4 [生理学];
学科分类号
071003 ;
摘要
Background and object: Mitotic count (MC) is a critical histological parameter for accurately assessing the degree of invasiveness in breast cancer, holding significant clinical value for cancer treatment and prognosis. However, accurately identifying mitotic cells poses a challenge due to their morphological and size diversity.Objective: We propose a novel end-to-end deep-learning method for identifying mitotic cells in breast cancer pathological images, with the aim of enhancing the performance of recognizing mitotic cells.Methods: We introduced the Dilated Cascading Network (DilCasNet) composed of detection and classification stages. To enhance the model's ability to capture distant feature dependencies in mitotic cells, we devised a novel Dilated Contextual Attention Module (DiCoA) that utilizes sparse global attention during the detection. For reclassifying mitotic cell areas localized in the detection stage, we integrate the EfficientNet-B7 and VGG16 pre-trained models (InPreMo) in the classification step.Results: Based on the canine mammary carcinoma (CMC) mitosis dataset, DilCasNet demonstrates superior overall performance compared to the benchmark model. The specific metrics of the model's performance are as follows: F1 score of 82.9%, Precision of 82.6%, and Recall of 83.2%. With the incorporation of the DiCoA attention module, the model exhibited an improvement of over 3.5% in the F1 during the detection stage.Conclusion: The DilCasNet achieved a favorable detection performance of mitotic cells in breast cancer and provides a solution for detecting mitotic cells in pathological images of other cancers.
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页数:12
相关论文
共 52 条
[1]   AggNet: Deep Learning From Crowds for Mitosis Detection in Breast Cancer Histology Images [J].
Albarqouni, Shadi ;
Baur, Christoph ;
Achilles, Felix ;
Belagiannis, Vasileios ;
Demirci, Stefanie ;
Navab, Nassir .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2016, 35 (05) :1313-1321
[2]   MitosisNet: End-to-End Mitotic Cell Detection by Multi-Task Learning [J].
Alom, Md Zahangir ;
Aspiras, Theus ;
Taha, Tarek M. ;
Bowen, T. J. ;
Asari, Vijayan K. .
IEEE ACCESS, 2020, 8 :68695-68710
[3]   A completely annotated whole slide image dataset of canine breast cancer to aid human breast cancer research [J].
Aubreville, Marc ;
Bertram, Christof A. ;
Donovan, Taryn A. ;
Marzahl, Christian ;
Maier, Andreas ;
Klopfleisch, Robert .
SCIENTIFIC DATA, 2020, 7 (01)
[4]   A Multi-Classifier System for Automatic Mitosis Detection in Breast Histopathology Images Using Deep Belief Networks [J].
Beevi, K. Sabeena ;
Nair, Madhu S. ;
Bindu, G. R. .
IEEE JOURNAL OF TRANSLATIONAL ENGINEERING IN HEALTH AND MEDICINE, 2017, 5
[5]   Computerized Calculation of Mitotic Count Distribution in Canine Cutaneous Mast Cell Tumor Sections: Mitotic Count Is Area Dependent [J].
Bertram, Christof A. ;
Aubreville, Marc ;
Gurtner, Corinne ;
Bartel, Alexander ;
Corner, Sarah M. ;
Dettwiler, Martina ;
Kershaw, Olivia ;
Noland, Erica L. ;
Schmidt, Anja ;
Sledge, Dodd G. ;
Smedley, Rebecca C. ;
Thaiwong, Tuddow ;
Kiupel, Matti ;
Maier, Andreas ;
Klopfleisch, Robert .
VETERINARY PATHOLOGY, 2020, 57 (02) :214-226
[6]   A large-scale dataset for mitotic figure assessment on whole slide images of canine cutaneous mast cell tumor [J].
Bertram, Christof A. ;
Aubreville, Marc ;
Marzahl, Christian ;
Maier, Andreas ;
Klopfleisch, Robert .
SCIENTIFIC DATA, 2019, 6 (1)
[7]   A General Survey on Attention Mechanisms in Deep Learning [J].
Brauwers, Gianni ;
Frasincar, Flavius .
IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, 2023, 35 (04) :3279-3298
[8]   Cascade R-CNN: Delving into High Quality Object Detection [J].
Cai, Zhaowei ;
Vasconcelos, Nuno .
2018 IEEE/CVF CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR), 2018, :6154-6162
[9]  
Chen K, 2019, Arxiv, DOI [arXiv:1906.07155, DOI 10.48550/ARXIV.1906.07155]
[10]   Mitosis Detection in Breast Cancer Histology Images with Deep Neural Networks [J].
Ciresan, Dan C. ;
Giusti, Alessandro ;
Gambardella, Luca M. ;
Schmidhuber, Juergen .
MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2013, PT II, 2013, 8150 :411-418