Draft genome sequence of two "Candidatus Intestinicoccus colisanans" strains isolated from faeces of healthy humans

被引:1
作者
Zhou, Joyce [1 ]
Boyd, Joel A. [1 ]
Nyeverecz, Bozica [1 ]
Vivian, Charlotte [1 ]
Angel, Nicola [1 ]
Wood, David L. A. [1 ]
Hugenholtz, Philip [2 ]
Tyson, Gene W. [1 ]
Krause, Lutz [1 ]
Cuiv, Paraic O. [1 ]
机构
[1] Microba Life Sci, Brisbane, Qld, Australia
[2] Univ Queensland, Australian Ctr Ecogenom, Sch Chem & Mol Biosci, St Lucia, Qld, Australia
关键词
Human; Gut; Health; Microbiome; Uncultured; Intestinicoccus colisanans;
D O I
10.1186/s13104-023-06447-3
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
ObjectivesIn order to provide a better insight into the functional capacity of the human gut microbiome, we isolated a novel bacterium, "Candidatus Intestinicoccus colisanans" gen. nov. sp. nov., and performed whole genome sequencing. This study will provide new insights into the functional potential of this bacterium and its role in modulating host health and well-being. We expect that this data resource will be useful in providing additional insight into the diversity and functional potential of the human microbiome.Data descriptionHere, we report the first draft genome sequences of "Candidatus Intestinicoccus colisanans" strains MH27-1 and MH27-2, recovered from faeces collected from healthy human donors. The genomes were sequenced using short-read Illumina technology and whole-genome-based comparisons and phylogenomics reconstruction indicate that "Candidatus Intestinicoccus colisanans" represents a novel genus and species within the family Acutalibacteraceae. Both genomes were estimated to be > 98% completed and to range in size from 2.9 to 3.3 Mb with a G + C content of approximately 51%. The gene repertoire of "Candidatus Intestinicoccus colisanans" indicate it is likely a saccharolytic gut bacterium.
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相关论文
共 16 条
[1]   A unified catalog of 204,938 reference genomes from the human gut microbiome [J].
Almeida, Alexandre ;
Nayfach, Stephen ;
Boland, Miguel ;
Strozzi, Francesco ;
Beracochea, Martin ;
Shi, Zhou Jason ;
Pollard, Katherine S. ;
Sakharova, Ekaterina ;
Parks, Donovan H. ;
Hugenholtz, Philip ;
Segata, Nicola ;
Kyrpides, Nikos C. ;
Finn, Robert D. .
NATURE BIOTECHNOLOGY, 2021, 39 (01) :105-114
[2]  
[Anonymous], ILLUMINA NDFMCEP
[3]   PHASTER: a better, faster version of the PHAST phage search tool [J].
Arndt, David ;
Grant, Jason R. ;
Marcu, Ana ;
Sajed, Tanvir ;
Pon, Allison ;
Liang, Yongjie ;
Wishart, David S. .
NUCLEIC ACIDS RESEARCH, 2016, 44 (W1) :W16-W21
[4]   antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline [J].
Blin, Kai ;
Shaw, Simon ;
Steinke, Katharina ;
Villebro, Rasmus ;
Ziemert, Nadine ;
Lee, Sang Yup ;
Medema, Marnix H. ;
Weber, Tilmann .
NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) :W81-W87
[5]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[6]  
Bushnell B., 2014, BBTOOLS SOFTWARE PAC
[7]  
Cuiv Paraic O., 2020, Improving rumen function, P29, DOI 10.19103/AS.2020.0067.03
[8]  
Nyeverecz ABJ, 2022, NCBI BIOPROJECT INFO
[9]  
Parks DH, 2020, NAT BIOTECHNOL, V38, P1079, DOI 10.1038/s41587-020-0501-8
[10]   CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes [J].
Parks, Donovan H. ;
Imelfort, Michael ;
Skennerton, Connor T. ;
Hugenholtz, Philip ;
Tyson, Gene W. .
GENOME RESEARCH, 2015, 25 (07) :1043-1055