Identification and validation of molecular subtypes' characteristics in bladder urothelial carcinoma based on autophagy-dependent ferroptosis

被引:2
|
作者
Liu, Shiwei [1 ,4 ,5 ]
Zhai, Jing [2 ]
Li, Deng [1 ]
Peng, Yu [2 ]
Wang, Yi [1 ,3 ,8 ]
Dai, Bo [4 ,5 ,6 ,7 ]
机构
[1] Fudan Univ, Shanghai Canc Ctr, Dept Urol, Shanghai 200032, Peoples R China
[2] Shanghai Jiao Tong Univ, Sch Med, Shanghai Gen Hosp, Dept Urol, Shanghai 200080, Peoples R China
[3] Shanghai Univ Tradit Chinese Med, Yueyang Hosp Integrated Tradit Chinese & Western, Inst Integrat Med, Shanghai 200437, Peoples R China
[4] Nantong Univ, Dept Urol, Affiliated Hosp, Nantong 226001, Jiangsu Provinc, Peoples R China
[5] Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai 200032, Peoples R China
[6] Shanghai Genitourinary Canc Inst, Shanghai 200032, Peoples R China
[7] Fudan Univ, Dept Urol, Shanghai Canc Ctr, 270 Dongan Rd, Shanghai 200032, Peoples R China
[8] Shanghai Jiao Tong Univ, Shanghai Gen Hosp, Dept Urol, Sch Med, 85 Wujin Rd, Shanghai 200080, Peoples R China
关键词
Autophagy-dependent ferroptosis; Bladder urothelial carcinoma; Immunotherapy; Prognosis; IMMUNE-RELATED GENES; TUMOR MICROENVIRONMENT; CANCER STATISTICS; PROFILES;
D O I
10.1016/j.heliyon.2023.e21092
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: Nowadays, more evidences indicated that autophagy-dependent ferroptosis regulatory molecules (ADFRMs) may be closely related to various tumors. In current study, we intended to establish a prognostic ADFRMs signature and investigated its potential roles in bladder urothelial carcinoma (BLCA).Methods: Two distinct clusters were determined by consensus clustering with expression of 119 identified ADFRMs in BLCA. The tumor microenvironment was investigated through "CIBER-SORT" algorithm, and enrichment analyses were utilized to seek molecular characteristics of differentially expressed genes (DEGs) between clusters. Moreover, a 2-ADFRMs prognostic signature including TRIB3 and WIPI1 was identified in TCGA cohort and further evaluated in the GSE13507 cohort. The qRT-PCR was conducted to examine the expression of prognostic genes. Further, the risk score was gained through calculating the level of TRIB3 and WIPI1 expression through the coefficient. The correlations between risk score with clinicopathologica features, tumor microenvironment, and drug sensitivity were explored.Results: Patients in TCGA-BLCA were grouped into two clusters with different expression patterns of ADFRMs. And the overall survival, tumor microenvironment and biological functions were significant different between two clusters. Moreover, a 2-ADFRMs model was constructed, and patients were separated into a low-risk and high-risk group. Survival analysis indicated patients with low risk promised a good prognosis, suggesting the risk score determined with ADFRMs signature exhibited an acceptable capacity for survival prediction in BLCA. Correlation analysis
引用
收藏
页数:16
相关论文
共 50 条
  • [41] Identification and Validation of Genomic Subtypes and a Prognostic Model Based on Antigen-Presenting Cells and Tumor Microenvironment Infiltration Characteristics in Hepatocellular Carcinoma
    Chen, Ji
    Li, Chunxue
    Lang, Zhichao
    Zheng, Jianjian
    Yu, Suhui
    Zhou, Zhenxu
    FRONTIERS IN ONCOLOGY, 2022, 12
  • [42] Identification of the ferroptosis regulator HELLS with prognostic value for adrenocortical carcinoma based on integrated analysis and experimental validation
    Liu, Zijian
    Xie, Yuxin
    Liu, Shengzhuo
    Shen, Sikui
    Zhu, Yuchun
    Gou, Qiheng
    GLAND SURGERY, 2023, 12 (09) : 1251 - +
  • [43] Identification and Validation of a Prognostic Model Based on Three Autophagy-Related Genes in Hepatocellular Carcinoma
    Qin, Fanbo
    Zhang, Junyong
    Gong, Jianping
    Zhang, Wenfeng
    BIOMED RESEARCH INTERNATIONAL, 2021, 2021
  • [44] Identification and validation of stemness-based and ferroptosis-related molecular clusters in pancreatic ductal adenocarcinoma
    Ruan, Shiye
    Wang, Hailiang
    Zhang, Zhongyan
    Yan, Qian
    Chen, Yubin
    Cui, Jinwei
    Huang, Shanzhou
    Zhou, Qi
    Zhang, Chuanzhao
    Hou, Baohua
    TRANSLATIONAL ONCOLOGY, 2024, 41
  • [45] TNF Family-Based Signature Predicts Prognosis, Tumor Microenvironment, and Molecular Subtypes in Bladder Carcinoma
    Li, Huihuang
    Liu, Siyuan
    Li, Chenxuan
    Xiao, Zicheng
    Hu, Jiao
    Zhao, Cheng
    FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2022, 9
  • [46] An RNA-sequencing-based transcriptome for a significantly prognostic novel driver signature identification in bladder urothelial carcinoma
    Liu, Danqi
    Zhou, Boting
    Liu, Rangru
    PEERJ, 2020, 8
  • [47] Prediction of response and identification of mechanisms of resistance to neoadjuvant chemotherapy according to molecular subtypes in muscle-invasive bladder carcinoma
    Pinto Marin, A.
    Trilla, L.
    Pedregosa Barbas, J.
    Garcia-Fernandez, E.
    Wisultschew-Puigdellivol, A.
    Zambrana Tevar, F.
    Martinez Salas, I.
    Gajate, P.
    Dittmann, A.
    Lopez-Vacas, R.
    Kunz, L.
    Rubio Romero, G.
    Nieto-Torrero, S.
    Lalanda-Delgado, P.
    Pertejo, A.
    Gonzalez-Peramato, M. P.
    Fresno-Vara, J-A.
    Gamez-Pozo, A.
    ANNALS OF ONCOLOGY, 2024, 35 : S1158 - S1158
  • [48] Investigation of ferroptosis-associated molecular subtypes and immunological characteristics in lupus nephritis based on artificial neural network learning
    Zhang, Li
    Yan, Qing
    Lin, Miao
    He, Juanjuan
    Tian, Jie
    Chen, Zhihan
    Hong, Fuyuan
    ARTHRITIS RESEARCH & THERAPY, 2024, 26 (01)
  • [49] Intratumoral heterogeneity of surrogate molecular subtypes in urothelial carcinoma in situ of the urinary bladder: implications for prognostic stratification of high-risk non-muscle-invasive bladder cancer
    Garczyk, Stefan
    Bischoff, Felix
    Schneider, Ursula
    Golz, Reinhard
    von Rundstedt, Friedrich-Carl
    Knuechel, Ruth
    Degener, Stephan
    VIRCHOWS ARCHIV, 2021, 479 (02) : 325 - 335
  • [50] Intratumoral heterogeneity of surrogate molecular subtypes in urothelial carcinoma in situ of the urinary bladder: implications for prognostic stratification of high-risk non-muscle-invasive bladder cancer
    Stefan Garczyk
    Felix Bischoff
    Ursula Schneider
    Reinhard Golz
    Friedrich-Carl von Rundstedt
    Ruth Knüchel
    Stephan Degener
    Virchows Archiv, 2021, 479 : 325 - 335