Identification and validation of molecular subtypes' characteristics in bladder urothelial carcinoma based on autophagy-dependent ferroptosis

被引:2
|
作者
Liu, Shiwei [1 ,4 ,5 ]
Zhai, Jing [2 ]
Li, Deng [1 ]
Peng, Yu [2 ]
Wang, Yi [1 ,3 ,8 ]
Dai, Bo [4 ,5 ,6 ,7 ]
机构
[1] Fudan Univ, Shanghai Canc Ctr, Dept Urol, Shanghai 200032, Peoples R China
[2] Shanghai Jiao Tong Univ, Sch Med, Shanghai Gen Hosp, Dept Urol, Shanghai 200080, Peoples R China
[3] Shanghai Univ Tradit Chinese Med, Yueyang Hosp Integrated Tradit Chinese & Western, Inst Integrat Med, Shanghai 200437, Peoples R China
[4] Nantong Univ, Dept Urol, Affiliated Hosp, Nantong 226001, Jiangsu Provinc, Peoples R China
[5] Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai 200032, Peoples R China
[6] Shanghai Genitourinary Canc Inst, Shanghai 200032, Peoples R China
[7] Fudan Univ, Dept Urol, Shanghai Canc Ctr, 270 Dongan Rd, Shanghai 200032, Peoples R China
[8] Shanghai Jiao Tong Univ, Shanghai Gen Hosp, Dept Urol, Sch Med, 85 Wujin Rd, Shanghai 200080, Peoples R China
关键词
Autophagy-dependent ferroptosis; Bladder urothelial carcinoma; Immunotherapy; Prognosis; IMMUNE-RELATED GENES; TUMOR MICROENVIRONMENT; CANCER STATISTICS; PROFILES;
D O I
10.1016/j.heliyon.2023.e21092
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: Nowadays, more evidences indicated that autophagy-dependent ferroptosis regulatory molecules (ADFRMs) may be closely related to various tumors. In current study, we intended to establish a prognostic ADFRMs signature and investigated its potential roles in bladder urothelial carcinoma (BLCA).Methods: Two distinct clusters were determined by consensus clustering with expression of 119 identified ADFRMs in BLCA. The tumor microenvironment was investigated through "CIBER-SORT" algorithm, and enrichment analyses were utilized to seek molecular characteristics of differentially expressed genes (DEGs) between clusters. Moreover, a 2-ADFRMs prognostic signature including TRIB3 and WIPI1 was identified in TCGA cohort and further evaluated in the GSE13507 cohort. The qRT-PCR was conducted to examine the expression of prognostic genes. Further, the risk score was gained through calculating the level of TRIB3 and WIPI1 expression through the coefficient. The correlations between risk score with clinicopathologica features, tumor microenvironment, and drug sensitivity were explored.Results: Patients in TCGA-BLCA were grouped into two clusters with different expression patterns of ADFRMs. And the overall survival, tumor microenvironment and biological functions were significant different between two clusters. Moreover, a 2-ADFRMs model was constructed, and patients were separated into a low-risk and high-risk group. Survival analysis indicated patients with low risk promised a good prognosis, suggesting the risk score determined with ADFRMs signature exhibited an acceptable capacity for survival prediction in BLCA. Correlation analysis
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页数:16
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