Precision diagnostics in chronic lymphocytic leukemia: Past, present and future

被引:13
作者
Mollstedt, John [1 ]
Mansouri, Larry [1 ]
Rosenquist, Richard [1 ,2 ]
机构
[1] Karolinska Inst, Dept Mol Med & Surg, Stockholm, Sweden
[2] Karolinska Univ Hosp, Clin Genet, Solna, Sweden
关键词
chronic lymphocitic leukemia; next-generation sequencing; genomic aberrations; precision diagnostics; precision medicine; TP53; MUTATIONS; RECURRENT MUTATIONS; CLINICAL IMPACT; SF3B1; CLONAL EVOLUTION; CYTOGENETIC ANALYSIS; GENE-MUTATIONS; CLL; NOTCH1; SURVIVAL;
D O I
10.3389/fonc.2023.1146486
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Genetic diagnostics of hematological malignancies has evolved dramatically over the years, from chromosomal banding analysis to next-generation sequencing, with a corresponding increased capacity to detect clinically relevant prognostic and predictive biomarkers. In diagnostics of patients with chronic lymphocytic leukemia (CLL), we currently apply fluorescence in situ hybridization (FISH)-based analysis to detect recurrent chromosomal aberrations (del(11q), del(13q), del(17p) and trisomy 12) as well as targeted sequencing (IGHV and TP53 mutational status) for risk-stratifying purposes. These analyses are performed before start of any line of treatment and assist in clinical decision-making including selection of targeted therapy (BTK and BCL2 inhibitors). Here, we present the current view on the genomic landscape of CLL, including an update on recent advances with potential for clinical translation. We discuss different state-of-the-art technologies that are applied to enable precision diagnostics in CLL and highlight important genomic markers with current prognostic and/or predictive impact as well as those of prospective clinical relevance. In the coming years, it will be important to develop more comprehensive genomic analyses that can capture all types of relevant genetic aberrations, but also to develop highly sensitive assays to detect minor mutations that affect therapy response or confer resistance to targeted therapies. Finally, we will bring up the potential of new technologies and multi-omics analysis to further subclassify the disease and facilitate implementation of precision medicine approaches in this still incurable disease.
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页数:11
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共 107 条
[1]   Immunoglobulin gene sequence analysis in chronic lymphocytic leukemia: the 2022 update of the recommendations by ERIC, the European Research Initiative on CLL [J].
Agathangelidis, Andreas ;
Chatzidimitriou, Anastasia ;
Chatzikonstantinou, Thomas ;
Tresoldi, Cristina ;
Davis, Zadie ;
Giudicelli, Veronique ;
Kossida, Sofia ;
Belessi, Chrysoula ;
Rosenquist, Richard ;
Ghia, Paolo ;
Langerak, Anton W. ;
Davi, Frederic ;
Stamatopoulos, Kostas .
LEUKEMIA, 2022, 36 (08) :1961-1968
[2]   Clonal evolution leading to ibrutinib resistance in chronic lymphocytic leukemia [J].
Ahn, Inhye E. ;
Underbayev, Chingiz ;
Albitar, Adam ;
Herman, Sarah E. M. ;
Tian, Xin ;
Maric, Irina ;
Arthur, Diane C. ;
Wake, Laura ;
Pittaluga, Stefania ;
Yuan, Constance M. ;
Stetler-Stevenson, Maryalice ;
Soto, Susan ;
Valdez, Janet ;
Nierman, Pia ;
Lotter, Jennifer ;
Xi, Liqiang ;
Raffeld, Mark ;
Farooqui, Mohammed ;
Albitar, Maher ;
Wiestner, Adrian .
BLOOD, 2017, 129 (11) :1469-1479
[3]   Signatures of mutational processes in human cancer [J].
Alexandrov, Ludmil B. ;
Nik-Zainal, Serena ;
Wedge, David C. ;
Aparicio, Samuel A. J. R. ;
Behjati, Sam ;
Biankin, Andrew V. ;
Bignell, Graham R. ;
Bolli, Niccolo ;
Borg, Ake ;
Borresen-Dale, Anne-Lise ;
Boyault, Sandrine ;
Burkhardt, Birgit ;
Butler, Adam P. ;
Caldas, Carlos ;
Davies, Helen R. ;
Desmedt, Christine ;
Eils, Roland ;
Eyfjord, Jorunn Erla ;
Foekens, John A. ;
Greaves, Mel ;
Hosoda, Fumie ;
Hutter, Barbara ;
Ilicic, Tomislav ;
Imbeaud, Sandrine ;
Imielinsk, Marcin ;
Jaeger, Natalie ;
Jones, David T. W. ;
Jones, David ;
Knappskog, Stian ;
Kool, Marcel ;
Lakhani, Sunil R. ;
Lopez-Otin, Carlos ;
Martin, Sancha ;
Munshi, Nikhil C. ;
Nakamura, Hiromi ;
Northcott, Paul A. ;
Pajic, Marina ;
Papaemmanuil, Elli ;
Paradiso, Angelo ;
Pearson, John V. ;
Puente, Xose S. ;
Raine, Keiran ;
Ramakrishna, Manasa ;
Richardson, Andrea L. ;
Richter, Julia ;
Rosenstiel, Philip ;
Schlesner, Matthias ;
Schumacher, Ton N. ;
Span, Paul N. ;
Teague, Jon W. .
NATURE, 2013, 500 (7463) :415-+
[4]   Multi-Omics Factor Analysis-a framework for unsupervised integration of multi-omics data sets [J].
Argelaguet, Ricard ;
Velten, Britta ;
Arnol, Damien ;
Dietrich, Sascha ;
Zenz, Thorsten ;
Marioni, John C. ;
Buettner, Florian ;
Huber, Wolfgang ;
Stegle, Oliver .
MOLECULAR SYSTEMS BIOLOGY, 2018, 14 (06)
[5]   NOTCH1 mutations in CLL associated with trisomy 12 [J].
Balatti, Veronica ;
Bottoni, Arianna ;
Palamarchuk, Alexey ;
Alder, Hansjuerg ;
Rassenti, Laura Z. ;
Kipps, Thomas J. ;
Pekarsky, Yuri ;
Croce, Carlo M. .
BLOOD, 2012, 119 (02) :329-331
[6]   Recurrent mutations refine prognosis in chronic lymphocytic leukemia [J].
Baliakas, P. ;
Hadzidimitriou, A. ;
Sutton, L-A ;
Rossi, D. ;
Minga, E. ;
Villamor, N. ;
Larrayoz, M. ;
Kminkova, J. ;
Agathangelidis, A. ;
Davis, Z. ;
Tausch, E. ;
Stalika, E. ;
Kantorova, B. ;
Mansouri, L. ;
Scarfo, L. ;
Cortese, D. ;
Navrkalova, V. ;
Rose-Zerilli, M. J. J. ;
Smedby, K. E. ;
Juliusson, G. ;
Anagnostopoulos, A. ;
Makris, A. M. ;
Navarro, A. ;
Delgado, J. ;
Oscier, D. ;
Belessi, C. ;
Stilgenbauer, S. ;
Ghia, P. ;
Pospisilova, S. ;
Gaidano, G. ;
Campo, E. ;
Strefford, J. C. ;
Stamatopoulos, K. ;
Rosenquist, R. .
LEUKEMIA, 2015, 29 (02) :329-336
[7]   Prognostic indices in chronic lymphocytic leukaemia: where do we stand how do we proceed? [J].
Baliakas, P. ;
Mattsson, M. ;
Stamatopoulos, K. ;
Rosenquist, R. .
JOURNAL OF INTERNAL MEDICINE, 2016, 279 (04) :347-357
[8]   Cytogenetics in Chronic Lymphocytic Leukemia: ERIC Perspectives and Recommendations [J].
Baliakas, Panagiotis ;
Espinet, Blanca ;
Mellink, Clemens ;
Jarosova, Marie ;
Athanasiadou, Anastasia ;
Ghia, Paolo ;
Kater, Arnon P. ;
Oscier, David ;
Haferlach, Claudia ;
Stamatopoulos, Kostas .
HEMASPHERE, 2022, 6 (04) :E707
[9]   Cytogenetic complexity in chronic lymphocytic leukemia: definitions, associations, and clinical impact [J].
Baliakas, Panagiotis ;
Jeromin, Sabine ;
Iskas, Michalis ;
Puiggros, Anna ;
Plevova, Karla ;
Nguyen-Khac, Florence ;
Davis, Zadie ;
Rigolin, Gian Matteo ;
Visentin, Andrea ;
Xochelli, Aliki ;
Delgado, Julio ;
Baran-Marszak, Fanny ;
Stalika, Evangelia ;
Abrisqueta, Pau ;
Durechova, Kristina ;
Papaioannou, George ;
Eclache, Virginie ;
Dimou, Maria ;
Iliakis, Theodoros ;
Collado, Rosa ;
Doubek, Michael ;
Jose Calasanz, M. ;
Ruiz-Xiville, Neus ;
Moreno, Carolina ;
Jarosova, Marie ;
Leeksma, Alexander C. ;
Panayiotidis, Panayiotis ;
Podgornik, Helena ;
Cymbalista, Florence ;
Anagnostopoulos, Achilles ;
Trentin, Livio ;
Stavroyianni, Niki ;
Davi, Fred ;
Ghia, Paolo ;
Kater, Arnon P. ;
Cuneo, Antonio ;
Pospisilova, Sarka ;
Espinet, Blanca ;
Athanasiadou, Anastasia ;
Oscier, David ;
Haferlach, Claudia ;
Stamatopoulos, Kostas .
BLOOD, 2019, 133 (11) :1205-1216
[10]   Tailored approaches grounded on immunogenetic features for refined prognostication in chronic lymphocytic leukemia [J].
Baliakas, Panagiotis ;
Moysiadis, Theodoros ;
Hadzidimitriou, Anastasia ;
Xochelli, Aliki ;
Jeromin, Sabine ;
Agathangelidis, Andreas ;
Mattsson, Mattias ;
Sutton, Lesley-Ann ;
Minga, Eva ;
Scarfo, Lydia ;
Rossi, Davide ;
Davis, Zadie ;
Villamor, Neus ;
Parker, Helen ;
Kotaskova, Jana ;
Stalika, Evangelia ;
Plevova, Karla ;
Mansouri, Larry ;
Cortese, Diego ;
Navarro, Alba ;
Delgado, Julio ;
Larrayoz, Marta ;
Young, Emma ;
Anagnostopoulos, Achilles ;
Smedby, Karin E. ;
Juliusson, Gunnar ;
Sheehy, Oonagh ;
Catherwood, Mark ;
Strefford, Jonathan C. ;
Stavroyianni, Niki ;
Belessi, Chrysoula ;
Pospisilova, Sarka ;
Oscier, David ;
Gaidano, Gianluca ;
Campo, Elias ;
Haferlach, Claudia ;
Ghia, Paolo ;
Rosenquist, Richard ;
Stamatopoulos, Kostas .
HAEMATOLOGICA, 2019, 104 (02) :360-369