Computing Optimal Leaf Roots of Chordal Cographs in Linear Time

被引:1
作者
Le, Van Bang [1 ]
Rosenke, Christian [1 ]
机构
[1] Univ Rostock, Inst Informatik, Rostock, Germany
来源
FUNDAMENTALS OF COMPUTATION THEORY, FCT 2023 | 2023年 / 14292卷
关键词
k-leaf power; k-leaf root; optimal k-leaf root; trivially perfect leaf power; chordal cograph; RECOGNITION; GRAPH;
D O I
10.1007/978-3-031-43587-4_25
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
A graph G is a k-leaf power, for an integer k >= 2, if there is a tree T with leaf set V (G) such that, for all vertices x, y is an element of V (G), the edge xy exists in G if and only if the distance between x and y in T is at most k. Such a tree T is called a k-leaf root of G. The computational problem of constructing a k-leaf root for a given graph G and an integer k, if any, is motivated by the challenge from computational biology to reconstruct phylogenetic trees. For fixed k, Lafond [SODA 2022] recently solved this problem in polynomial time. In this paper, we propose to study optimal leaf roots of graphs G, that is, the k-leaf roots of G with minimum k value. Thus, all k'-leaf roots of G satisfy k <= k'. In terms of computational biology, seeking optimal leaf roots is more justified as they yield more probable phylogenetic trees. Lafond's result does not imply polynomial-time computability of optimal leaf roots, because, even for optimal k-leaf roots, k may (exponentially) depend on the size of G. This paper presents a linear-time construction of optimal leaf roots for chordal cographs (also known as trivially perfect graphs). Additionally, it highlights the importance of the parity of the parameter k and provides a deeper insight into the differences between optimal k-leaf roots of even versus odd k.
引用
收藏
页码:348 / 362
页数:15
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