Transfer RNA-derived small RNAs (tsRNAs) in gastric cancer

被引:6
作者
Gan, Lu [1 ]
Song, Haojun [2 ,3 ]
Ding, Xiaoyun [2 ]
机构
[1] Ningbo Univ, Hlth Sci Ctr, Ningbo, Peoples R China
[2] Ningbo Univ, Affiliated Hosp 1, Gastroenterol Dept, Ningbo, Peoples R China
[3] Ningbo Univ, Affiliated Hosp 1, Biobank, Ningbo, Peoples R China
来源
FRONTIERS IN ONCOLOGY | 2023年 / 13卷
关键词
tsRNAs; tRFs; tiRNAs; gastric cancer; biomarker; FRAGMENTS; EXPRESSION; DATABASE; BINDING; BREAST;
D O I
10.3389/fonc.2023.1184615
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Transfer RNA-derived small RNAs (tsRNAs) are newly discovered noncoding RNAs (ncRNAs). According to the specific cleavage of nucleases at different sites of tRNAs, the produced tsRNAs are divided into tRNA-derived stress-inducible RNAs (tiRNAs) and tRNA-derived fragments (tRFs). tRFs and tiRNAs have essential biological functions, such as mRNA stability regulation, translation regulation and epigenetic regulation, and play significant roles in the occurrence and development of various tumors. Although the roles of tsRNAs in some tumors have been intensively studied, their roles in gastric cancer are still rarely reported. In this review, we focus on recent advances in the generation and classification of tsRNAs, their biological functions, and their roles in gastric cancer. Sixteen articles investigating dysregulated tsRNAs in gastric cancer are summarized. The roles of 17 tsRNAs are summarized, of which 9 were upregulated and 8 were downregulated compared with controls. Aberrant regulation of tsRNAs was closely related to the main clinicopathological factors of gastric cancer, such as lymph node metastasis, Tumor-Node-Metastasis (TNM) stage, tumor size, and vascular invasion. tsRNAs participate in the progression of gastric cancer by regulating the PTEN/PI3K/AKT, MAPK, Wnt, and p53 signaling pathways. The available literature suggests the potential of using tsRNAs as clinical biomarkers for gastric cancer diagnosis and prognosis and as therapeutic targets for gastric cancer treatment.
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页数:15
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共 63 条
  • [31] Global profile of tRNA-derived small RNAs in gastric cancer patient plasma and identification of tRF-33-P4R8YP9LON4VDP as a new tumor suppressor
    Shen, Yijing
    Yu, Xiuchong
    Ruan, Yao
    Li, Zhe
    Xie, Yaoyao
    Yan, Zhilong
    Guo, Junming
    [J]. INTERNATIONAL JOURNAL OF MEDICAL SCIENCES, 2021, 18 (07): : 1570 - 1579
  • [32] PANDORA-seq expands the repertoire of regulatory small RNAs by overcoming RNA modifications
    Shi, Junchao
    Zhang, Yunfang
    Tan, Dongmei
    Zhang, Xudong
    Yan, Menghong
    Zhang, Ying
    Franklin, Reuben
    Shahbazi, Marta
    Mackinlay, Kirsty
    Liu, Shichao
    Kuhle, Bernhard
    James, Emma R.
    Zhang, Liwen
    Qu, Yongcun
    Zhai, Qiwei
    Zhao, Wenxin
    Zhao, Linlin
    Zhou, Changcheng
    Gu, Weifeng
    Murn, Jernej
    Guo, Jingtao
    Carrell, Douglas T.
    Wang, Yinsheng
    Chen, Xuemei
    Cairns, Bradley R.
    Yang, Xiang-lei
    Schimmel, Paul
    Zernicka-Goetz, Magdalena
    Cheloufi, Sihem
    Zhang, Ying
    Zhou, Tong
    Chen, Qi
    [J]. NATURE CELL BIOLOGY, 2021, 23 (04) : 424 - +
  • [33] SPORTS1.0: A Tool for Annotating and Profiling Non-coding RNAs Optimized for rRNA- and tRNA-derived Small RNAs
    Shi, Junchao
    Ko, Eun-A
    Sanders, Kenton M.
    Chen, Qi
    Zhou, Tong
    [J]. GENOMICS PROTEOMICS & BIOINFORMATICS, 2018, 16 (02) : 144 - 151
  • [34] Transposable elements and the epigenetic regulation of the genome
    Slotkin, R. Keith
    Martienssen, Robert
    [J]. NATURE REVIEWS GENETICS, 2007, 8 (04) : 272 - 285
  • [35] Angiogenin generates specific stress-induced tRNA halves and is not involved in tRF-3?mediated gene silencing
    Su, Zhangli
    Kuscu, Canan
    Malik, Asrar
    Shibata, Etsuko
    Dutta, Anindya
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2019, 294 (45) : 16930 - 16941
  • [36] Global cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries
    Sung, Hyuna
    Ferlay, Jacques
    Siegel, Rebecca L.
    Laversanne, Mathieu
    Soerjomataram, Isabelle
    Jemal, Ahmedin
    Bray, Freddie
    [J]. CA-A CANCER JOURNAL FOR CLINICIANS, 2021, 71 (03) : 209 - 249
  • [37] tiRNAs: A novel class of small noncoding RNAs that helps cells respond to stressors and plays roles in cancer progression
    Tao, En-Wei
    Cheng, Wing Yin
    Li, Wei-Lin
    Yu, Jun
    Gao, Qin-Yan
    [J]. JOURNAL OF CELLULAR PHYSIOLOGY, 2020, 235 (02) : 683 - 690
  • [38] tRex: A Web Portal for Exploration of tRNA-Derived Fragments in Arabidopsis thaliana
    Thompson, Agnieszka
    Zielezinski, Andrzej
    Plewka, Patrycja
    Szymanski, Maciej
    Nuc, Przemyslaw
    Szweykowska-Kulinska, Zofia
    Jarmolowski, Artur
    Karlowski, Wojciech M.
    [J]. PLANT AND CELL PHYSIOLOGY, 2018, 59 (01) : E1
  • [39] The tRNA-Derived Fragment-3017A Promotes Metastasis by Inhibiting NELL2 in Human Gastric Cancer
    Tong, Linhao
    Zhang, Weixu
    Qu, Bicheng
    Zhang, Fei
    Wu, Zhonghua
    Shi, Jinxin
    Chen, Xiaowan
    Song, Yongxi
    Wang, Zhenning
    [J]. FRONTIERS IN ONCOLOGY, 2021, 10
  • [40] FMRP-dependent Mdm2 dephosphorylation is required for MEF2-induced synapse elimination
    Tsai, Nien-Pei
    Wilkerson, Julia R.
    Guo, Weirui
    Huber, Kimberly M.
    [J]. HUMAN MOLECULAR GENETICS, 2017, 26 (02) : 293 - 304